BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0138100 Os06g0138100|AK069328
         (254 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0138100  Methionine sulfoxide reductase A domain contai...   407   e-114
Os04g0482000  Similar to Peptide methionine sulfoxide reductase   109   2e-24
Os04g0482100                                                      101   6e-22
Os10g0563600  Similar to Peptide methionine sulfoxide reduct...    99   3e-21

>Os06g0138100 Methionine sulfoxide reductase A domain containing protein
          Length = 254

 Score =  407 bits (1045), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/195 (100%), Positives = 195/195 (100%)

Query: 60  GSFWRSEAAFGCLPGVIRTSVGYAGGSKARPEYRNLGDHAECVKVEYDPRLIQYKKLLEV 119
           GSFWRSEAAFGCLPGVIRTSVGYAGGSKARPEYRNLGDHAECVKVEYDPRLIQYKKLLEV
Sbjct: 60  GSFWRSEAAFGCLPGVIRTSVGYAGGSKARPEYRNLGDHAECVKVEYDPRLIQYKKLLEV 119

Query: 120 FWASHDPREVFGQGPDVGNQYRSIIFTNGSVEARLAGLSKEKEQAKDRRSVITTQIQPIG 179
           FWASHDPREVFGQGPDVGNQYRSIIFTNGSVEARLAGLSKEKEQAKDRRSVITTQIQPIG
Sbjct: 120 FWASHDPREVFGQGPDVGNQYRSIIFTNGSVEARLAGLSKEKEQAKDRRSVITTQIQPIG 179

Query: 180 AFYPAEPEHQKFELKRKPFLLQLIGNLPEEELLTSTLAAKLNAYAAELCSPNTQNRINSK 239
           AFYPAEPEHQKFELKRKPFLLQLIGNLPEEELLTSTLAAKLNAYAAELCSPNTQNRINSK
Sbjct: 180 AFYPAEPEHQKFELKRKPFLLQLIGNLPEEELLTSTLAAKLNAYAAELCSPNTQNRINSK 239

Query: 240 IDEIAKKGWPILRDI 254
           IDEIAKKGWPILRDI
Sbjct: 240 IDEIAKKGWPILRDI 254



>Os04g0482000 Similar to Peptide methionine sulfoxide reductase
          Length = 187

 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 78/136 (57%), Gaps = 5/136 (3%)

Query: 60  GSFWRSEAAFGCLPGVIRTSVGYAGGSKARPEYRNL----GDHAECVKVEYDPRLIQYKK 115
           G FW  E  +  LPGV RT VGY+ G +  P YR++      HAE V+V YDP+   Y+ 
Sbjct: 33  GCFWSVELTYQRLPGVARTEVGYSQGHRHEPTYRDVCGGGTGHAEVVRVHYDPKACPYEV 92

Query: 116 LLEVFWASHDPREVFGQGPDVGNQYRSIIFTNGSVEARLAGLSKEKEQAKDRRSVITTQI 175
           LL+VFWA H+P  +  QG DVG QYRS I+   + E   A      E+ K+ +  I T+I
Sbjct: 93  LLDVFWAKHNPTTLNRQGNDVGTQYRSGIYYY-TAEQEKAARDSLAEKQKEWKERIVTEI 151

Query: 176 QPIGAFYPAEPEHQKF 191
            P   FYPAE  HQ++
Sbjct: 152 LPATRFYPAEEYHQRY 167



>Os04g0482100 
          Length = 190

 Score =  101 bits (251), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 77/136 (56%), Gaps = 5/136 (3%)

Query: 60  GSFWRSEAAFGCLPGVIRTSVGYAGGSKARPEYRNL----GDHAECVKVEYDPRLIQYKK 115
           G FW  E  +  LPGV RT VG++ G    P Y ++      HAE V+V YDP+   Y  
Sbjct: 36  GCFWSVELTYQRLPGVARTEVGFSQGHHHEPTYDDVCGQGTGHAEVVRVHYDPKACPYGV 95

Query: 116 LLEVFWASHDPREVFGQGPDVGNQYRSIIFTNGSVEARLAGLSKEKEQAKDRRSVITTQI 175
           LL+VFWA H P  +  QG + G QYRS I+   + + R+A  S E +Q ++ +  I T+I
Sbjct: 96  LLDVFWAKHRPTTLIRQGDEAGTQYRSGIYYYTAEQERVARESLEAKQ-EEWKEKIVTEI 154

Query: 176 QPIGAFYPAEPEHQKF 191
            P   FYPAE  HQ++
Sbjct: 155 LPARRFYPAEEYHQRY 170



>Os10g0563600 Similar to Peptide methionine sulfoxide reductase (EC 1.8.4.6)
           (Protein- methionine-S-oxide reductase) (Peptide Met(O)
           reductase)
          Length = 263

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 77/139 (55%), Gaps = 5/139 (3%)

Query: 60  GSFWRSEAAFGCLPGVIRTSVGYAGGSKARPEYRNLGD----HAECVKVEYDPRLIQYKK 115
           G FW  E AF  +PGV RT VGY+ G+   P Y ++      H E V+V YD    ++  
Sbjct: 104 GCFWGVELAFQRVPGVTRTEVGYSQGNLHDPTYEDVCTGATYHNEVVRVHYDVSACKFDD 163

Query: 116 LLEVFWASHDPREVFGQGPDVGNQYRSIIFTNGSVEARLAGLSKEKEQAKDRRSVITTQI 175
           LL+VFWA HDP     QG DVG QYRS I+     + + A  S EK+Q    R+++ T+I
Sbjct: 164 LLDVFWARHDPTTPNRQGNDVGTQYRSGIYYYTPEQEKAARESLEKQQKLLNRTIV-TEI 222

Query: 176 QPIGAFYPAEPEHQKFELK 194
            P   FY AE  HQ++  K
Sbjct: 223 LPAKRFYRAEEYHQQYLAK 241



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,893,947
Number of extensions: 265307
Number of successful extensions: 656
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 650
Number of HSP's successfully gapped: 4
Length of query: 254
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 155
Effective length of database: 11,866,615
Effective search space: 1839325325
Effective search space used: 1839325325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)