Os06g0138100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Methionine sulfoxide reductase A domain containing protein.
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Os06g0138100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Methionine sulfoxide reductase A domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.7 | 0.273 | 11.8 | -0.698 | 1.35 | -0.273 | -0.155 | -0.687 | 0.134 | 16.1 | 49.97 | 4239 | -- | -- |
| 34.18 | 0.272 | 11.8 | -0.714 | 1.36 | -0.358 | -0.331 | -- | 0.158 | 16 | 48 | 4315 | -- | -- |
| 33.77 | 0.271 | 11.8 | -0.697 | 1.35 | -0.274 | -- | -0.674 | 0.132 | 16.1 | 49.99 | 4239 | -- | -- |
| 33.48 | 0.269 | 11.8 | -0.627 | 1.34 | -0.537 | -- | -- | 0.129 | 16.1 | 48.53 | 4204 | -- | -- |
| 132.45 | 0.536 | 11.8 | -0.694 | -- | -0.454 | -- | -0.681 | 0.0713 | -- | 49 | 4123 | -- | -- |
| 38.64 | 0.291 | 11.8 | -0.843 | 1.37 | -- | -0.0767 | -- | 0.172 | 16.1 | -- | -- | -- | -- |
| 38.65 | 0.291 | 11.8 | -0.844 | 1.37 | -- | -- | -- | 0.171 | 16.1 | -- | -- | -- | -- |
| 131.82 | 0.535 | 11.8 | -0.688 | -- | -0.671 | -- | -- | 0.0331 | -- | 49.99 | 4135 | -- | -- |
| 42.7 | 0.304 | 11.8 | -- | 1.34 | -0.777 | -- | -- | 0.0888 | 16.3 | 48 | 4215 | -- | -- |
| 140.54 | 0.554 | 11.8 | -0.899 | -- | -- | -- | -- | 0.135 | -- | -- | -- | -- | -- |
| 57.41 | 0.354 | 11.7 | -- | 1.39 | -- | -- | -- | 0.265 | 16.1 | -- | -- | -- | -- |
| 140.05 | 0.551 | 11.8 | -- | -- | -0.973 | -- | -- | 0.0947 | -- | 49.02 | 4193 | -- | -- |
| 161.87 | 0.594 | 11.7 | -- | -- | -- | -- | -- | 0.234 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.36 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 15 |
| 33 | 31.95 | temperature | 25.0 | 90 | < th | dose independent | rect. | 15 | 15 |
| 34 | 31.96 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 36 | 32.03 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 49 | 32.25 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 14 |
| 50 | 32.30 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 12 |
| 67 | 32.48 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 14 |
| 80 | 32.59 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 4 |
| 96 | 32.68 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 17 | 10 |
| 113 | 32.79 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 21 | 13 |
| 115 | 32.80 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 14 | 7 |
| 141 | 32.92 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 172 | 33.02 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 188 | 33.07 | temperature | 15.0 | 10 | > th | dose dependent | sin | 14 | NA |
| 197 | 33.09 | temperature | 15.0 | 90 | > th | dose dependent | sin | 14 | NA |
| 227 | 33.15 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 239 | 33.19 | humidity | 50.0 | 720 | > th | dose independent | rect. | 6 | 10 |
| 251 | 33.21 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 264 | 33.25 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 282 | 33.27 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 291 | 33.29 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 292 | 33.29 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 318 | 33.33 | temperature | 20.0 | 10 | > th | dose independent | rect. | 6 | 22 |
| 324 | 33.34 | temperature | 20.0 | 90 | > th | dose independent | rect. | 6 | 22 |
| 331 | 33.36 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 336 | 33.37 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 338 | 33.38 | temperature | 25.0 | 90 | < th | dose independent | rect. | 15 | 8 |
| 340 | 33.38 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 341 | 33.38 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 342 | 33.38 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 347 | 33.39 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 354 | 33.40 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 363 | 33.41 | temperature | 25.0 | 270 | < th | dose independent | rect. | 15 | 5 |
| 365 | 33.41 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 370 | 33.42 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 373 | 33.42 | humidity | 80.0 | 4320 | < th | dose dependent | sin | 8 | NA |
| 377 | 33.43 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 378 | 33.43 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 391 | 33.44 | wind | 3.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 394 | 33.44 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 402 | 33.45 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 2 |
| 404 | 33.45 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 417 | 33.47 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 426 | 33.47 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 430 | 33.48 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 438 | 33.48 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 7 |
| 445 | 33.49 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 446 | 33.49 | wind | 3.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 521 | 33.54 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 14 | 22 |
| 526 | 33.55 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 1 | 7 |
| 530 | 33.56 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 531 | 33.56 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 532 | 33.56 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 7 | 4 |
| 535 | 33.56 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 539 | 33.56 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 544 | 33.57 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 551 | 33.57 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 14 | 8 |
| 553 | 33.58 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 7 | 4 |
| 558 | 33.58 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 622 | 33.61 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 6 |
| 768 | 33.67 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 10 |
| 775 | 33.68 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 791 | 33.68 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 800 | 33.69 | humidity | 70.0 | 4320 | < th | dose independent | sin | 7 | NA |
| 805 | 33.69 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 820 | 33.70 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 823 | 33.70 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 855 | 33.72 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 867 | 33.73 | humidity | 50.0 | 4320 | < th | dose independent | sin | 23 | NA |
| 873 | 33.73 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 17 | 23 |
| 894 | 33.74 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 899 | 33.74 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 11 | 6 |
| 919 | 33.74 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 929 | 33.75 | humidity | 50.0 | 4320 | < th | dose independent | no | NA | NA |
| 938 | 33.75 | temperature | 30.0 | 720 | < th | dose independent | rect. | 2 | 11 |