FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0482100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.71 (0.0334) R2 : 2.97e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00817 (0.0702) R2dN8 : 3.83e-05 R2N8 : 2.97e-05
σ : 0.628
deviance : 181.15
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
143.92 0.564 3.77 -0.104 0.326 2.23 0.778 -12.9 0.128 16.7 30.02 241 -- --
145.32 0.561 3.69 0.59 0.325 0.877 0.584 -- 0.125 16.3 32.13 295 -- --
145.4 0.562 3.76 -0.0594 0.323 2.24 -- -12.3 0.138 16.4 30.19 241 -- --
146.52 0.564 3.69 0.582 0.326 0.904 -- -- 0.137 16.3 31.73 295 -- --
149.87 0.57 3.75 -0.0199 -- 2.13 -- -9.68 0.128 -- 29.6 252 -- --
154.17 0.582 3.71 0.651 0.496 -- 1.1 -- 0.086 17 -- -- -- --
157.23 0.587 3.7 0.652 0.503 -- -- -- 0.0915 16.9 -- -- -- --
150.52 0.571 3.69 0.526 -- 0.96 -- -- 0.11 -- 28.23 312 -- --
155.28 0.58 3.7 -- 0.286 0.956 -- -- 0.0817 16.3 30.85 296 -- --
170.55 0.61 3.7 0.634 -- -- -- -- 0.0785 -- -- -- -- --
168.45 0.607 3.72 -- 0.491 -- -- -- 0.0188 16.9 -- -- -- --
157.84 0.585 3.7 -- -- 1.01 -- -- 0.0499 -- 28.1 322 -- --
181.15 0.628 3.71 -- -- -- -- -- 0.00817 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 137.25 temperature 15.0 90 > th dose dependent rect. 14 5
3 137.45 radiation 1.0 90 < th dose dependent sin 15 NA
12 137.87 wind 5.0 30 < th dose independent rect. 14 5
14 137.95 temperature 20.0 270 > th dose dependent rect. 14 2
19 138.22 wind 7.0 30 < th dose independent rect. 2 17
20 138.25 radiation 1.0 90 > th dose independent sin 15 NA
23 138.31 precipitation 0.1 30 < th dose independent rect. 2 17
24 138.31 precipitation 0.1 30 < th dose dependent rect. 2 17
26 138.36 radiation 1.0 90 < th dose independent sin 14 NA
29 138.43 wind 9.0 30 < th dose dependent rect. 14 5
30 138.45 temperature 10.0 30 > th dose independent rect. 19 7
31 138.45 temperature 30.0 30 < th dose independent rect. 19 7
32 138.45 humidity 50.0 30 > th dose independent rect. 19 7
34 138.45 atmosphere 995.0 30 > th dose independent rect. 19 7
35 138.45 radiation 1.0 30 < th dose independent rect. 19 7
40 138.45 temperature 10.0 30 > th dose independent rect. 2 17
42 138.45 atmosphere 1015.0 30 < th dose independent rect. 2 17
44 138.45 radiation 1.0 30 < th dose dependent rect. 19 7
49 138.48 wind 9.0 30 < th dose independent rect. 19 7
63 138.86 atmosphere 1015.0 30 < th dose independent rect. 19 7
68 139.04 radiation 40.0 90 < th dose independent rect. 13 6
69 139.07 temperature 10.0 90 > th dose dependent rect. 19 19
72 139.14 temperature 25.0 90 > th dose independent rect. 14 5
74 139.18 temperature 10.0 30 > th dose dependent rect. 19 7
81 139.31 radiation 20.0 270 > th dose dependent rect. 15 17
87 139.36 precipitation 0.1 30 < th dose independent rect. 19 7
89 139.36 precipitation 0.1 30 < th dose dependent rect. 19 7
111 139.43 radiation 1.0 1440 < th dose dependent rect. 20 7
112 139.44 radiation 40.0 30 < th dose dependent rect. 13 6
114 139.47 radiation 1.0 270 > th dose independent sin 18 NA
128 139.60 radiation 1.0 270 < th dose dependent sin 20 NA
130 139.63 radiation 1.0 270 < th dose independent sin 19 NA
136 139.70 radiation 20.0 270 > th dose independent rect. 14 18
141 139.72 temperature 10.0 1440 > th dose independent rect. 20 7
144 139.72 temperature 30.0 1440 < th dose independent rect. 20 7
148 139.72 humidity 50.0 1440 > th dose independent rect. 20 7
154 139.72 atmosphere 995.0 1440 > th dose independent rect. 20 7
155 139.72 radiation 1.0 1440 < th dose independent rect. 20 7
175 139.72 temperature 10.0 1440 > th dose independent rect. 3 17
185 139.81 wind 7.0 270 < th dose independent rect. 14 2
187 139.83 precipitation 0.1 90 < th dose independent rect. 14 5
188 139.83 precipitation 0.1 90 < th dose dependent rect. 14 5
191 139.86 humidity 50.0 270 > th dose independent rect. 16 21
193 139.88 temperature 15.0 90 > th dose independent rect. 19 18
204 139.93 atmosphere 1015.0 30 < th dose dependent rect. 19 7
206 139.93 atmosphere 1015.0 30 < th dose dependent rect. 19 19
211 139.98 temperature 10.0 270 > th dose dependent rect. 11 7
217 140.02 temperature 20.0 30 > th dose dependent rect. 17 2
220 140.03 wind 9.0 90 < th dose independent rect. 19 18
224 140.05 radiation 1.0 270 < th dose dependent rect. 11 11
229 140.07 radiation 1.0 270 < th dose independent rect. 11 11
233 140.08 radiation 1.0 270 < th dose independent rect. 13 9
240 140.11 radiation 1.0 270 < th dose independent rect. 17 5
243 140.11 radiation 1.0 270 < th dose independent rect. 7 15
258 140.17 temperature 10.0 90 > th dose independent rect. 13 6
260 140.17 atmosphere 1010.0 90 < th dose independent rect. 13 6
262 140.17 radiation 1.0 270 > th dose independent rect. 11 8
273 140.17 atmosphere 995.0 90 > th dose independent rect. 19 18
276 140.19 atmosphere 1000.0 30 > th dose independent rect. 2 17
293 140.22 radiation 1.0 270 < th dose dependent rect. 7 15
303 140.25 radiation 1.0 90 < th dose dependent rect. 3 23
304 140.26 atmosphere 1015.0 30 < th dose dependent rect. 14 5
314 140.30 radiation 1.0 90 < th dose dependent rect. 7 18
326 140.40 radiation 1.0 270 > th dose independent rect. 14 2
329 140.42 wind 1.0 90 > th dose independent rect. 14 5
338 140.44 humidity 60.0 270 > th dose independent rect. 17 5
339 140.44 wind 9.0 270 < th dose dependent rect. 14 2
344 140.45 humidity 50.0 30 > th dose dependent rect. 19 7
352 140.52 radiation 1.0 90 < th dose dependent rect. 11 14
354 140.53 radiation 1.0 90 < th dose dependent rect. 13 12
365 140.55 radiation 1.0 90 < th dose dependent rect. 15 10
368 140.57 temperature 25.0 30 > th dose independent rect. 17 2
370 140.57 temperature 30.0 270 < th dose independent rect. 17 5
382 140.62 radiation 20.0 270 > th dose dependent rect. 15 2
401 140.64 atmosphere 1015.0 270 < th dose dependent rect. 19 1
408 140.65 radiation 1.0 270 > th dose independent rect. 13 5
409 140.66 temperature 25.0 270 > th dose independent rect. 14 2
410 140.66 humidity 90.0 30 < th dose independent rect. 14 5
413 140.69 atmosphere 1015.0 30 < th dose independent rect. 19 19
415 140.70 radiation 1.0 270 > th dose independent rect. 10 22
430 140.73 radiation 1.0 90 > th dose independent rect. 15 4
441 140.73 precipitation 0.1 90 < th dose independent rect. 19 19
443 140.73 precipitation 0.1 90 < th dose dependent rect. 19 19
447 140.75 temperature 30.0 90 < th dose independent rect. 8 15
451 140.76 wind 9.0 30 < th dose dependent rect. 2 17
498 140.84 temperature 30.0 270 < th dose independent rect. 16 7
509 140.89 humidity 60.0 270 > th dose independent rect. 6 16
511 140.90 radiation 30.0 270 > th dose independent rect. 15 1
560 140.95 atmosphere 1015.0 270 < th dose dependent rect. 18 4
579 140.97 temperature 15.0 270 > th dose independent rect. 16 22
581 140.97 radiation 40.0 43200 < th dose dependent rect. 20 7
584 140.99 temperature 10.0 270 > th dose independent rect. 14 2
586 140.99 atmosphere 1010.0 270 < th dose independent rect. 14 2
588 140.99 temperature 10.0 1440 > th dose independent rect. 15 5
591 140.99 temperature 10.0 1440 > th dose independent rect. 20 19
602 141.00 radiation 1.0 90 > th dose dependent rect. 17 14
605 141.01 atmosphere 1010.0 270 < th dose independent rect. 19 1
608 141.02 precipitation 0.1 270 < th dose independent rect. 14 2
616 141.02 precipitation 0.1 270 < th dose dependent rect. 14 2
626 141.05 wind 1.0 270 > th dose independent rect. 14 2
627 141.05 wind 7.0 270 < th dose independent rect. 22 20
628 141.05 precipitation 0.1 270 < th dose independent rect. 22 20
631 141.05 precipitation 0.1 270 < th dose dependent rect. 22 20
641 141.09 humidity 60.0 270 > th dose independent rect. 19 1
648 141.11 wind 9.0 270 < th dose independent rect. 19 1
649 141.11 temperature 10.0 270 > th dose independent rect. 19 1
650 141.11 temperature 30.0 270 < th dose independent rect. 19 1
652 141.11 atmosphere 995.0 270 > th dose independent rect. 19 1
654 141.11 radiation 1.0 270 < th dose independent rect. 19 1
660 141.11 temperature 10.0 270 > th dose independent rect. 20 23
661 141.11 radiation 1.0 270 < th dose dependent rect. 19 1
669 141.12 wind 7.0 270 < th dose independent rect. 11 7
684 141.16 wind 9.0 270 < th dose independent rect. 16 22
692 141.20 wind 1.0 30 > th dose independent rect. 19 7
707 141.22 temperature 30.0 90 < th dose independent rect. 3 23
725 141.24 wind 9.0 270 < th dose independent rect. 20 23
789 141.36 wind 1.0 90 > th dose independent rect. 19 19
809 141.38 atmosphere 1015.0 270 < th dose independent rect. 18 4
836 141.40 wind 9.0 30 < th dose dependent rect. 19 7
837 141.41 wind 1.0 270 > th dose independent rect. 19 1
842 141.41 radiation 40.0 4320 < th dose independent rect. 16 4
860 141.42 atmosphere 1000.0 90 > th dose independent rect. 13 6
891 141.47 temperature 15.0 270 > th dose independent rect. 17 20
896 141.48 humidity 90.0 90 < th dose dependent rect. 15 4
900 141.49 precipitation 0.1 270 < th dose independent rect. 11 7
902 141.49 radiation 1.0 90 > th dose independent rect. 15 17
906 141.49 precipitation 0.1 270 < th dose dependent rect. 11 7
921 141.53 temperature 30.0 90 < th dose independent rect. 8 17
932 141.55 humidity 80.0 270 < th dose dependent rect. 14 2
966 141.61 temperature 10.0 270 > th dose independent rect. 18 4
973 141.61 temperature 10.0 270 > th dose independent rect. 22 20
977 141.62 wind 9.0 270 < th dose independent rect. 18 4
992 141.65 wind 9.0 270 < th dose independent rect. 17 20
993 141.65 radiation 40.0 30 < th dose dependent rect. 2 17
999 141.66 atmosphere 995.0 90 > th dose independent rect. 19 4