Os04g0482000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peptide methionine sulfoxide reductase.
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Os04g0482000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peptide methionine sulfoxide reductase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.85 | 0.338 | 12 | 0.772 | 0.42 | -0.678 | -0.19 | -0.243 | -0.15 | 9.23 | 0.3654 | 48 | -- | -- |
| 51.91 | 0.336 | 12 | 0.762 | 0.419 | -0.679 | 0.0728 | -- | -0.149 | 9.28 | 0.36 | 48 | -- | -- |
| 51.83 | 0.335 | 12 | 0.765 | 0.42 | -0.681 | -- | -0.126 | -0.151 | 9.23 | 0.3667 | 48 | -- | -- |
| 51.89 | 0.336 | 12 | 0.769 | 0.428 | -0.674 | -- | -- | -0.145 | 9.28 | 0.3601 | 49 | -- | -- |
| 58.57 | 0.356 | 12.1 | 0.667 | -- | -0.814 | -- | -0.0792 | -0.217 | -- | 0.4 | 45 | -- | -- |
| 61.35 | 0.367 | 12 | 0.804 | 1.15 | -- | 0.148 | -- | -0.137 | 11.1 | -- | -- | -- | -- |
| 61.44 | 0.367 | 12 | 0.81 | 1.15 | -- | -- | -- | -0.136 | 11.1 | -- | -- | -- | -- |
| 57.18 | 0.352 | 12 | 0.684 | -- | -0.871 | -- | -- | -0.128 | -- | 0.3 | 44 | -- | -- |
| 67.64 | 0.383 | 12 | -- | 0.434 | -0.692 | -- | -- | -0.147 | 9 | 0.06 | 49 | -- | -- |
| 143.2 | 0.559 | 12 | 0.783 | -- | -- | -- | -- | -0.146 | -- | -- | -- | -- | -- |
| 78.72 | 0.415 | 12 | -- | 1.14 | -- | -- | -- | -0.227 | 11 | -- | -- | -- | -- |
| 72.07 | 0.395 | 12 | -- | -- | -0.836 | -- | -- | -0.209 | -- | 0.3 | 35 | -- | -- |
| 159.38 | 0.589 | 12 | -- | -- | -- | -- | -- | -0.233 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.37 | radiation | 1.0 | 30 | > th | dose independent | sin | 12 | NA |
| 2 | 49.40 | radiation | 1.0 | 30 | < th | dose dependent | sin | 13 | NA |
| 3 | 49.47 | radiation | 1.0 | 30 | < th | dose independent | sin | 12 | NA |
| 8 | 49.73 | radiation | 1.0 | 90 | > th | dose independent | rect. | 12 | 19 |
| 17 | 50.41 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 21 |
| 24 | 50.68 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 51 | 51.29 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 89 | 52.02 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 20 |
| 90 | 52.02 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 92 | 52.10 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 14 |
| 93 | 52.10 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 96 | 52.13 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 104 | 52.21 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 7 | 22 |
| 106 | 52.24 | humidity | 60.0 | 270 | > th | dose independent | rect. | 7 | 4 |
| 118 | 52.34 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 16 | 11 |
| 121 | 52.37 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 11 | 18 |
| 122 | 52.37 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 127 | 52.40 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 5 |
| 128 | 52.40 | humidity | 70.0 | 30 | > th | dose independent | rect. | 18 | 11 |
| 131 | 52.41 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 13 | 16 |
| 133 | 52.42 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 149 | 52.56 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 150 | 52.56 | humidity | 70.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 152 | 52.57 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 4 |
| 153 | 52.58 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 157 | 52.59 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 7 | 22 |
| 163 | 52.60 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 14 |
| 171 | 52.63 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 185 | 52.70 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 189 | 52.71 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 4 |
| 191 | 52.71 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 194 | 52.72 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 4 |
| 195 | 52.72 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 4 |
| 196 | 52.72 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 4 |
| 197 | 52.72 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 20 |
| 205 | 52.77 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 7 | 22 |
| 214 | 52.79 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 221 | 52.82 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 15 |
| 223 | 52.83 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 4 |
| 235 | 52.85 | wind | 7.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 243 | 52.87 | temperature | 30.0 | 90 | < th | dose independent | rect. | 7 | 22 |
| 247 | 52.89 | radiation | 1.0 | 90 | < th | dose independent | rect. | 7 | 21 |
| 252 | 52.91 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 257 | 52.91 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 14 |
| 258 | 52.91 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 260 | 52.91 | radiation | 1.0 | 30 | < th | dose dependent | no | NA | NA |
| 261 | 52.91 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 11 | 21 |
| 267 | 52.91 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 268 | 52.91 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 270 | 52.92 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 272 | 52.94 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 277 | 52.95 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 13 | 19 |
| 286 | 52.96 | wind | 9.0 | 90 | < th | dose independent | rect. | 7 | 22 |
| 287 | 52.97 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 19 |
| 290 | 52.98 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 293 | 53.00 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 2 |
| 295 | 53.00 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 298 | 53.02 | radiation | 1.0 | 90 | < th | dose independent | rect. | 11 | 17 |
| 309 | 53.03 | wind | 7.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 311 | 53.03 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 313 | 53.03 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 314 | 53.03 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 316 | 53.03 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 318 | 53.03 | radiation | 30.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 322 | 53.03 | temperature | 10.0 | 90 | > th | dose independent | rect. | 7 | 22 |
| 325 | 53.03 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 335 | 53.06 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 21 |
| 341 | 53.07 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 9 | 20 |
| 351 | 53.09 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 17 |
| 361 | 53.10 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 367 | 53.10 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 368 | 53.10 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 371 | 53.11 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 15 |
| 378 | 53.13 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 400 | 53.19 | temperature | 30.0 | 30 | < th | dose independent | rect. | 18 | 11 |
| 401 | 53.19 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 425 | 53.23 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 18 | 18 |
| 434 | 53.25 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 19 |
| 444 | 53.27 | humidity | 80.0 | 270 | < th | dose independent | rect. | 12 | 6 |
| 464 | 53.29 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 472 | 53.32 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 474 | 53.32 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 19 |
| 475 | 53.32 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 19 |
| 478 | 53.33 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 479 | 53.33 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 5 |
| 482 | 53.33 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 490 | 53.34 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 492 | 53.34 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 493 | 53.34 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 496 | 53.34 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 497 | 53.34 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 498 | 53.34 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 502 | 53.34 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 18 | 11 |
| 563 | 53.40 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 599 | 53.44 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 5 |
| 609 | 53.45 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 623 | 53.47 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 3 |
| 641 | 53.48 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 15 | 16 |
| 645 | 53.48 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 661 | 53.50 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 671 | 53.51 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 677 | 53.52 | wind | 7.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 678 | 53.52 | humidity | 70.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 684 | 53.53 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 686 | 53.53 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 687 | 53.53 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 689 | 53.53 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 690 | 53.53 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 696 | 53.53 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 724 | 53.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 9 |
| 726 | 53.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 742 | 53.59 | wind | 1.0 | 90 | > th | dose independent | rect. | 7 | 22 |
| 754 | 53.60 | temperature | 20.0 | 90 | > th | dose independent | rect. | 18 | 10 |
| 755 | 53.60 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 15 |
| 763 | 53.60 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 17 | 14 |
| 765 | 53.61 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 776 | 53.62 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 783 | 53.63 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 819 | 53.68 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 852 | 53.70 | radiation | 1.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 876 | 53.71 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 13 |
| 882 | 53.71 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 13 |
| 888 | 53.73 | wind | 3.0 | 30 | < th | dose independent | rect. | 5 | 4 |
| 890 | 53.73 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 10 |
| 895 | 53.73 | radiation | 1.0 | 30 | < th | dose independent | rect. | 18 | 22 |
| 896 | 53.73 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 902 | 53.74 | radiation | 1.0 | 30 | < th | dose independent | rect. | 18 | 20 |
| 918 | 53.75 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 15 |
| 930 | 53.76 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 941 | 53.77 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 950 | 53.79 | temperature | 15.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 957 | 53.81 | wind | 9.0 | 270 | < th | dose independent | rect. | 22 | 9 |
| 959 | 53.81 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 9 |
| 960 | 53.81 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 962 | 53.81 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 963 | 53.81 | radiation | 30.0 | 270 | < th | dose independent | rect. | 22 | 9 |
| 965 | 53.81 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 15 |
| 993 | 53.84 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 8 |