BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0482000 Os04g0482000|AK064801
(187 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G61640.1 | chr5:24775107-24776147 FORWARD LENGTH=203 238 1e-63
AT4G25130.1 | chr4:12898802-12899998 REVERSE LENGTH=259 234 1e-62
AT5G07460.1 | chr5:2360844-2361885 REVERSE LENGTH=219 228 1e-60
AT5G07470.1 | chr5:2362760-2364286 REVERSE LENGTH=203 225 1e-59
AT2G18030.1 | chr2:7840207-7841496 FORWARD LENGTH=255 92 1e-19
>AT5G61640.1 | chr5:24775107-24776147 FORWARD LENGTH=203
Length = 202
Score = 238 bits (607), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 109/159 (68%), Positives = 129/159 (81%), Gaps = 5/159 (3%)
Query: 34 CFWSVELTYQRLPGVARTEVGYSQGHRHEPTYRDVCGGGTGHAEVVRVHYDPKACPYEVL 93
CFWSVEL YQR+PGV +TEVGYSQG H+P+Y+DVC G T HAE+VRV YDPK C Y+ L
Sbjct: 44 CFWSVELAYQRVPGVTQTEVGYSQGITHDPSYKDVCSGTTNHAEIVRVQYDPKECSYQSL 103
Query: 94 LDVFWAKHNPTTLNRQGNDVGTQYRSGIYYYTAEQEKAARDSLAEKQKEWKERIVTEILP 153
LD+FW+KH+PTTLNRQGNDVGTQYRSGIY+Y EQEK AR+SL Q++ ++VTEILP
Sbjct: 104 LDLFWSKHDPTTLNRQGNDVGTQYRSGIYFYNPEQEKLARESLERHQQQVDRKVVTEILP 163
Query: 154 ATRFYPAEEYHQRYLEKGG-----QSAKKSCNDPIRCYG 187
A +FY AEE+HQ+YL KGG QS +K CNDPIRCYG
Sbjct: 164 AKKFYRAEEHHQQYLSKGGRFGLKQSTEKGCNDPIRCYG 202
>AT4G25130.1 | chr4:12898802-12899998 REVERSE LENGTH=259
Length = 258
Score = 234 bits (598), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 110/159 (69%), Positives = 126/159 (79%), Gaps = 5/159 (3%)
Query: 34 CFWSVELTYQRLPGVARTEVGYSQGHRHEPTYRDVCGGGTGHAEVVRVHYDPKACPYEVL 93
CFW VEL YQR+PGV +TEVGYS G H P+Y DVC G TGH EVVRV YDPK C +E L
Sbjct: 100 CFWGVELAYQRVPGVTKTEVGYSHGIVHNPSYEDVCTGTTGHNEVVRVQYDPKECSFESL 159
Query: 94 LDVFWAKHNPTTLNRQGNDVGTQYRSGIYYYTAEQEKAARDSLAEKQKEWKERIVTEILP 153
LDVFW +H+PTTLNRQG DVGTQYRSGIYYYT EQE+ AR+++ ++QK +RIVTEILP
Sbjct: 160 LDVFWNRHDPTTLNRQGGDVGTQYRSGIYYYTDEQERIAREAVEKQQKILNKRIVTEILP 219
Query: 154 ATRFYPAEEYHQRYLEKGG-----QSAKKSCNDPIRCYG 187
AT+FY AE YHQ+YL KGG QSA+K C DPIRCYG
Sbjct: 220 ATKFYRAENYHQQYLAKGGRMGLRQSAEKGCKDPIRCYG 258
>AT5G07460.1 | chr5:2360844-2361885 REVERSE LENGTH=219
Length = 218
Score = 228 bits (582), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 106/159 (66%), Positives = 124/159 (77%), Gaps = 5/159 (3%)
Query: 34 CFWSVELTYQRLPGVARTEVGYSQGHRHEPTYRDVCGGGTGHAEVVRVHYDPKACPYEVL 93
CFW VEL +QR+PGV TEVGY+ G H P+Y DVC T HAEVVRV YDPK C YE L
Sbjct: 60 CFWGVELAFQRIPGVTVTEVGYTHGISHNPSYEDVCTNTTNHAEVVRVQYDPKECTYETL 119
Query: 94 LDVFWAKHNPTTLNRQGNDVGTQYRSGIYYYTAEQEKAARDSLAEKQKEWKERIVTEILP 153
LD+FW++HNPTTLNRQG +G QYRSGIY+YT EQEK AR+SL ++QK+ +++IVTEILP
Sbjct: 120 LDLFWSRHNPTTLNRQGELLGAQYRSGIYFYTPEQEKLARESLEKEQKKLEDKIVTEILP 179
Query: 154 ATRFYPAEEYHQRYLEKGG-----QSAKKSCNDPIRCYG 187
A +FY AEEYHQ+YL KGG QS KSC DPIRCYG
Sbjct: 180 AKKFYKAEEYHQQYLVKGGMHGNAQSPAKSCKDPIRCYG 218
>AT5G07470.1 | chr5:2362760-2364286 REVERSE LENGTH=203
Length = 202
Score = 225 bits (573), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 104/159 (65%), Positives = 124/159 (77%), Gaps = 5/159 (3%)
Query: 34 CFWSVELTYQRLPGVARTEVGYSQGHRHEPTYRDVCGGGTGHAEVVRVHYDPKACPYEVL 93
CFW VEL +QR+PGV +TE GY+QG P+Y DVC G TGH+EVVRV YD C YE L
Sbjct: 44 CFWGVELAFQRVPGVTQTEAGYTQGTVDNPSYGDVCSGTTGHSEVVRVQYDLNDCTYESL 103
Query: 94 LDVFWAKHNPTTLNRQGNDVGTQYRSGIYYYTAEQEKAARDSLAEKQKEWKERIVTEILP 153
LD+FW++H+PTTLNRQGNDVGTQYRSGIY+YT EQEK AR+SL Q++ + +I+TEILP
Sbjct: 104 LDLFWSRHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKLARESLERHQQQMERKIMTEILP 163
Query: 154 ATRFYPAEEYHQRYLEKG-----GQSAKKSCNDPIRCYG 187
A +FY AEE+HQ+YL KG GQS K CNDPIRCYG
Sbjct: 164 AKKFYRAEEHHQQYLSKGGRFGQGQSTAKGCNDPIRCYG 202
>AT2G18030.1 | chr2:7840207-7841496 FORWARD LENGTH=255
Length = 254
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 35 FWSVELTYQRLPGVARTEVGYSQGHRHEPTYRDVCGGGTGHAEVVRVHYDPKACPYEVLL 94
FW E + + GV RT GY+ G + P YR++ HAE V+V YDP+ Y LL
Sbjct: 62 FWRSEAAFGCINGVVRTSAGYAGGTKTNPEYRNL----GDHAESVQVEYDPRIIGYRQLL 117
Query: 95 DVFWAKHNPTTLNRQGNDVGTQYRSGIYYYTAEQEKAARDSLAEKQKEWKERIV-TEILP 153
DVFW+ H+ + QG DVG QYRS I+ + E+ + A S +Q + IV T+I
Sbjct: 118 DVFWSSHDSRQVFGQGPDVGNQYRSCIFTNSTEELRLASTSKEREQLNTRSSIVTTQIQQ 177
Query: 154 ATRFYPAEEYHQRY 167
FY AE HQ++
Sbjct: 178 LGTFYRAEPDHQKF 191
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,846,418
Number of extensions: 155595
Number of successful extensions: 387
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 5
Length of query: 187
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 94
Effective length of database: 8,556,881
Effective search space: 804346814
Effective search space used: 804346814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)