BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0482000 Os04g0482000|AK064801
         (187 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0482000  Similar to Peptide methionine sulfoxide reductase   326   5e-90
Os04g0482100                                                      280   5e-76
Os10g0563600  Similar to Peptide methionine sulfoxide reduct...   241   3e-64
Os06g0138100  Methionine sulfoxide reductase A domain contai...   108   2e-24

>Os04g0482000 Similar to Peptide methionine sulfoxide reductase
          Length = 187

 Score =  326 bits (836), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 154/154 (100%), Positives = 154/154 (100%)

Query: 34  CFWSVELTYQRLPGVARTEVGYSQGHRHEPTYRDVCGGGTGHAEVVRVHYDPKACPYEVL 93
           CFWSVELTYQRLPGVARTEVGYSQGHRHEPTYRDVCGGGTGHAEVVRVHYDPKACPYEVL
Sbjct: 34  CFWSVELTYQRLPGVARTEVGYSQGHRHEPTYRDVCGGGTGHAEVVRVHYDPKACPYEVL 93

Query: 94  LDVFWAKHNPTTLNRQGNDVGTQYRSGIYYYTAEQEKAARDSLAEKQKEWKERIVTEILP 153
           LDVFWAKHNPTTLNRQGNDVGTQYRSGIYYYTAEQEKAARDSLAEKQKEWKERIVTEILP
Sbjct: 94  LDVFWAKHNPTTLNRQGNDVGTQYRSGIYYYTAEQEKAARDSLAEKQKEWKERIVTEILP 153

Query: 154 ATRFYPAEEYHQRYLEKGGQSAKKSCNDPIRCYG 187
           ATRFYPAEEYHQRYLEKGGQSAKKSCNDPIRCYG
Sbjct: 154 ATRFYPAEEYHQRYLEKGGQSAKKSCNDPIRCYG 187



>Os04g0482100 
          Length = 190

 Score =  280 bits (715), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 132/154 (85%), Positives = 140/154 (90%)

Query: 34  CFWSVELTYQRLPGVARTEVGYSQGHRHEPTYRDVCGGGTGHAEVVRVHYDPKACPYEVL 93
           CFWSVELTYQRLPGVARTEVG+SQGH HEPTY DVCG GTGHAEVVRVHYDPKACPY VL
Sbjct: 37  CFWSVELTYQRLPGVARTEVGFSQGHHHEPTYDDVCGQGTGHAEVVRVHYDPKACPYGVL 96

Query: 94  LDVFWAKHNPTTLNRQGNDVGTQYRSGIYYYTAEQEKAARDSLAEKQKEWKERIVTEILP 153
           LDVFWAKH PTTL RQG++ GTQYRSGIYYYTAEQE+ AR+SL  KQ+EWKE+IVTEILP
Sbjct: 97  LDVFWAKHRPTTLIRQGDEAGTQYRSGIYYYTAEQERVARESLEAKQEEWKEKIVTEILP 156

Query: 154 ATRFYPAEEYHQRYLEKGGQSAKKSCNDPIRCYG 187
           A RFYPAEEYHQRYLEKGGQSA+K C DPIR YG
Sbjct: 157 ARRFYPAEEYHQRYLEKGGQSAQKGCTDPIRRYG 190



>Os10g0563600 Similar to Peptide methionine sulfoxide reductase (EC 1.8.4.6)
           (Protein- methionine-S-oxide reductase) (Peptide Met(O)
           reductase)
          Length = 263

 Score =  241 bits (614), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 116/159 (72%), Positives = 129/159 (81%), Gaps = 5/159 (3%)

Query: 34  CFWSVELTYQRLPGVARTEVGYSQGHRHEPTYRDVCGGGTGHAEVVRVHYDPKACPYEVL 93
           CFW VEL +QR+PGV RTEVGYSQG+ H+PTY DVC G T H EVVRVHYD  AC ++ L
Sbjct: 105 CFWGVELAFQRVPGVTRTEVGYSQGNLHDPTYEDVCTGATYHNEVVRVHYDVSACKFDDL 164

Query: 94  LDVFWAKHNPTTLNRQGNDVGTQYRSGIYYYTAEQEKAARDSLAEKQKEWKERIVTEILP 153
           LDVFWA+H+PTT NRQGNDVGTQYRSGIYYYT EQEKAAR+SL ++QK     IVTEILP
Sbjct: 165 LDVFWARHDPTTPNRQGNDVGTQYRSGIYYYTPEQEKAARESLEKQQKLLNRTIVTEILP 224

Query: 154 ATRFYPAEEYHQRYLEKGG-----QSAKKSCNDPIRCYG 187
           A RFY AEEYHQ+YL KGG     QSA+K CNDPIRCYG
Sbjct: 225 AKRFYRAEEYHQQYLAKGGRFGFRQSAEKGCNDPIRCYG 263



>Os06g0138100 Methionine sulfoxide reductase A domain containing protein
          Length = 254

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 77/135 (57%), Gaps = 5/135 (3%)

Query: 34  CFWSVELTYQRLPGVARTEVGYSQGHRHEPTYRDVCGGGTGHAEVVRVHYDPKACPYEVL 93
            FW  E  +  LPGV RT VGY+ G +  P YR++      HAE V+V YDP+   Y+ L
Sbjct: 61  SFWRSEAAFGCLPGVIRTSVGYAGGSKARPEYRNL----GDHAECVKVEYDPRLIQYKKL 116

Query: 94  LDVFWAKHNPTTLNRQGNDVGTQYRSGIYYY-TAEQEKAARDSLAEKQKEWKERIVTEIL 152
           L+VFWA H+P  +  QG DVG QYRS I+   + E   A      E+ K+ +  I T+I 
Sbjct: 117 LEVFWASHDPREVFGQGPDVGNQYRSIIFTNGSVEARLAGLSKEKEQAKDRRSVITTQIQ 176

Query: 153 PATRFYPAEEYHQRY 167
           P   FYPAE  HQ++
Sbjct: 177 PIGAFYPAEPEHQKF 191



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,238,093
Number of extensions: 256468
Number of successful extensions: 545
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 542
Number of HSP's successfully gapped: 4
Length of query: 187
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 92
Effective length of database: 12,075,471
Effective search space: 1110943332
Effective search space used: 1110943332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)