BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0135900 Os06g0135900|AK100230
(522 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0135900 Similar to Sec1p-like protein 2 (Fragment) 1083 0.0
Os04g0252400 Similar to Sec1p-like protein 1 (Fragment) 478 e-135
Os02g0452500 Similar to Sec1p-like protein 1 (Fragment) 332 6e-91
Os02g0437800 Similar to Vacuolar protein-sorting protein 45... 105 8e-23
Os03g0620800 Similar to SEC1-family transport protein SLY1 ... 93 6e-19
>Os06g0135900 Similar to Sec1p-like protein 2 (Fragment)
Length = 522
Score = 1083 bits (2801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/522 (100%), Positives = 522/522 (100%)
Query: 1 MSMSGSDFGAPCDDPKIFRNICRDRILKDLLQPDKDKETKSSWKVLIMDKFTVRIMAYAC 60
MSMSGSDFGAPCDDPKIFRNICRDRILKDLLQPDKDKETKSSWKVLIMDKFTVRIMAYAC
Sbjct: 1 MSMSGSDFGAPCDDPKIFRNICRDRILKDLLQPDKDKETKSSWKVLIMDKFTVRIMAYAC 60
Query: 61 KMAEITDAGISLVEDLFKRREPMPSMDAIYFLQPLKENVIMLLSDMSGRCPLYRKAYIFF 120
KMAEITDAGISLVEDLFKRREPMPSMDAIYFLQPLKENVIMLLSDMSGRCPLYRKAYIFF
Sbjct: 61 KMAEITDAGISLVEDLFKRREPMPSMDAIYFLQPLKENVIMLLSDMSGRCPLYRKAYIFF 120
Query: 121 SSPIPKELVSYIKNDSSVIPRIGALREMNLEFFAIDMQGFTTDHDMAFTDLYSAQHNSKK 180
SSPIPKELVSYIKNDSSVIPRIGALREMNLEFFAIDMQGFTTDHDMAFTDLYSAQHNSKK
Sbjct: 121 SSPIPKELVSYIKNDSSVIPRIGALREMNLEFFAIDMQGFTTDHDMAFTDLYSAQHNSKK 180
Query: 181 FNDTISTMATRIATTFASLKEFPCVRYRAPKGTDPMTTPKFDMVPKWLATAVWDIVSKYK 240
FNDTISTMATRIATTFASLKEFPCVRYRAPKGTDPMTTPKFDMVPKWLATAVWDIVSKYK
Sbjct: 181 FNDTISTMATRIATTFASLKEFPCVRYRAPKGTDPMTTPKFDMVPKWLATAVWDIVSKYK 240
Query: 241 STIPEFPQKETCELLIVDRPIDQIAPVIHEWTYDAMCHDLLEMDGQKYIYEVSKAGSEPE 300
STIPEFPQKETCELLIVDRPIDQIAPVIHEWTYDAMCHDLLEMDGQKYIYEVSKAGSEPE
Sbjct: 241 STIPEFPQKETCELLIVDRPIDQIAPVIHEWTYDAMCHDLLEMDGQKYIYEVSKAGSEPE 300
Query: 301 RKEALLEDHDPLWVELRHIHIADASERLYDKMNNFVSKNKAAQLHSRDGGEISTKDLQKI 360
RKEALLEDHDPLWVELRHIHIADASERLYDKMNNFVSKNKAAQLHSRDGGEISTKDLQKI
Sbjct: 301 RKEALLEDHDPLWVELRHIHIADASERLYDKMNNFVSKNKAAQLHSRDGGEISTKDLQKI 360
Query: 361 VQALPQYGEQVEKLTLHIEIAGKINKFIREYGLRDIGQVEQDLVFGDAAAKEVISILRSK 420
VQALPQYGEQVEKLTLHIEIAGKINKFIREYGLRDIGQVEQDLVFGDAAAKEVISILRSK
Sbjct: 361 VQALPQYGEQVEKLTLHIEIAGKINKFIREYGLRDIGQVEQDLVFGDAAAKEVISILRSK 420
Query: 421 QDMSPENKLRLLIIYAIVYPEKFEGDKGEKLMQLAKLPHDEMDAINSLRYLVGSDTKKAS 480
QDMSPENKLRLLIIYAIVYPEKFEGDKGEKLMQLAKLPHDEMDAINSLRYLVGSDTKKAS
Sbjct: 421 QDMSPENKLRLLIIYAIVYPEKFEGDKGEKLMQLAKLPHDEMDAINSLRYLVGSDTKKAS 480
Query: 481 RPGGFSLKFDAQKKKNAARTERQDGDETWALSRFFPLIEAFD 522
RPGGFSLKFDAQKKKNAARTERQDGDETWALSRFFPLIEAFD
Sbjct: 481 RPGGFSLKFDAQKKKNAARTERQDGDETWALSRFFPLIEAFD 522
>Os04g0252400 Similar to Sec1p-like protein 1 (Fragment)
Length = 544
Score = 478 bits (1230), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/376 (60%), Positives = 293/376 (77%), Gaps = 5/376 (1%)
Query: 148 MNLEFFAIDMQGFTTDHDMAFTDLYSAQ-HNSKKFNDTISTMATRIATTFASLKEFPCVR 206
MNLE+FAID QGFTTDHD A +L+S S K+N ++ MATRIAT FAS++EFP V
Sbjct: 1 MNLEYFAIDSQGFTTDHDKALEELFSENAEGSLKYNSCLNMMATRIATVFASMREFPRVH 60
Query: 207 YRAPKGTDPMT-TPKFDMVPKWLATAVWDIVSKYKSTIPEFPQKETCELLIVDRPIDQIA 265
YR + D T T D+ P LA VW+ ++++K+ IPEFPQ ETCELLIVDR IDQIA
Sbjct: 61 YRVARTIDASTLTTLRDLAPTKLAAGVWNCLARFKAMIPEFPQTETCELLIVDRSIDQIA 120
Query: 266 PVIHEWTYDAMCHDLLEMDGQKYIYEV-SKAGSEPERKEALLEDHDPLWVELRHIHIADA 324
P+IHEWTYDAMCHDLL MDG KY+ +V SK+GS E KE LLEDHDP+W+ELRH+HIA+A
Sbjct: 121 PIIHEWTYDAMCHDLLCMDGNKYVQQVPSKSGSGTENKEVLLEDHDPIWLELRHVHIANA 180
Query: 325 SERLYDKMNNFVSKNKAAQLH-SRDGGEISTKDLQKIVQALPQYGEQVEKLTLHIEIAGK 383
SERL++KM NFVSKNKAAQLH +R+GG++STK+LQK+VQALPQY +Q++KL LH+EIAGK
Sbjct: 181 SERLHEKMTNFVSKNKAAQLHQARNGGDLSTKELQKMVQALPQYSDQIDKLALHVEIAGK 240
Query: 384 INKFIREYGLRDIGQVEQDLVFGDAAAKEVISILRSKQDMSPENKLRLLIIYAIVYPEKF 443
+N I+E L+D+GQ+EQDLVFGDA KE+I+ R+ D+S ENKLRLL++YA + P+K
Sbjct: 241 LNSTIKEQQLKDVGQLEQDLVFGDAGTKELINFFRTHLDISRENKLRLLMVYAAINPDKT 300
Query: 444 EGDKGEKLMQLAKLPHDEMDAINSLRYLVGSDTKKASRPGGFSLKFDAQKKKNAARTERQ 503
DKG KLMQLA L D+M A++++R L G D+KK+S GGF+LKFD +KK++ R ER
Sbjct: 301 RSDKGAKLMQLAGLSADDMIAVSNMRCLCGHDSKKSS-AGGFTLKFDLRKKRHGIRKERI 359
Query: 504 DGDETWALSRFFPLIE 519
+ W LSRF+P++E
Sbjct: 360 GEESKWMLSRFYPILE 375
>Os02g0452500 Similar to Sec1p-like protein 1 (Fragment)
Length = 241
Score = 332 bits (850), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 158/237 (66%), Positives = 194/237 (81%), Gaps = 4/237 (1%)
Query: 148 MNLEFFAIDMQGFTTDHDMAFTDLYSAQH-NSKKFNDTISTMATRIATTFASLKEFPCVR 206
MNLE+FAID QGFTTDH+ A +L+S +S K+N ++TMATRI+T FAS++EFP V
Sbjct: 1 MNLEYFAIDSQGFTTDHERALEELFSENALDSHKYNACLNTMATRISTVFASMREFPRVH 60
Query: 207 YRAPKGTDP-MTTPKFDMVPKWLATAVWDIVSKYKSTIPEFPQKETCELLIVDRPIDQIA 265
YR K D +TT D+VP LA AVW+ +SK K++IP++PQ ETCELLIVDR +DQIA
Sbjct: 61 YRVAKTIDASVTTTLRDLVPTKLAAAVWNCLSKLKTSIPDYPQTETCELLIVDRSVDQIA 120
Query: 266 PVIHEWTYDAMCHDLLEMDGQKYIYEV-SKAGSEPERKEALLEDHDPLWVELRHIHIADA 324
P+IHEWTYDAMCHDLL MDG KY++EV SK GS E+K+ LLEDHDP+WVELRH HIADA
Sbjct: 121 PIIHEWTYDAMCHDLLCMDGNKYVHEVPSKNGSSTEKKDVLLEDHDPIWVELRHAHIADA 180
Query: 325 SERLYDKMNNFVSKNKAAQL-HSRDGGEISTKDLQKIVQALPQYGEQVEKLTLHIEI 380
SERL+DKM+NFVSKNKAAQL +R GGEIS +DLQK+VQALPQY +Q+EKL+LH+E+
Sbjct: 181 SERLHDKMSNFVSKNKAAQLQQARTGGEISNRDLQKMVQALPQYSDQIEKLSLHVEV 237
>Os02g0437800 Similar to Vacuolar protein-sorting protein 45 homolog (AtVPS45)
Length = 567
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 106/439 (24%), Positives = 207/439 (47%), Gaps = 44/439 (10%)
Query: 24 DRILKDLLQPDKDKETKSSWKVLIMDKFTVRIMAYACKMAEITDAGISLVEDL---FKRR 80
DR+L D+ KVL++D TV +++ +++ + LVE + R
Sbjct: 12 DRMLHDI----------PGMKVLVLDPDTVGMVSVVYSQSDLLRKEVFLVETVDNASSSR 61
Query: 81 EPMPSMDAIYFLQPLKENVIMLLSDMSGRCPLYRKAYIFFSSPIPKELVSYIKNDSSVIP 140
E M + A+YFL+P +NV L ++ P + + ++FFS+ + + + DS
Sbjct: 62 ESMAHLKAVYFLRPSSDNVQKLRRHLA--APRFAEYHLFFSNVLKIPQIQVLA-DSDEQE 118
Query: 141 RIGALREMNLEFFAIDMQGFTTDHDMAFTDLYSAQHNSKKFNDTISTMATRIATTFASLK 200
+ ++E +F AID FT + + + IA+ F +LK
Sbjct: 119 VVQQVQEFYADFCAIDPYHFTLNIRNNHVYMLPMVVDPPGMQSFCDRAVDGIASVFLALK 178
Query: 201 EFPCVRYRAPKGTDPMTTPKFDMVPKWLATAVWDIVSKYKSTIPEFPQKETCELLIV-DR 259
P +RY+ + +D V K +A ++ + +S + +F + E LL+V DR
Sbjct: 179 RRPVIRYQ--RTSD---------VAKRIAQETARLMYEQESGLFDFRRTENSSLLLVIDR 227
Query: 260 PIDQIAPVIHEWTYDAMCHDLLEMDGQKYIYEVSKAGSEP-ERKEALLED-HDPLWVELR 317
D + P++++WTY AM H+L+ ++ K ++ + + P ++KE +L D +
Sbjct: 228 RDDPVTPLLNQWTYQAMVHELIGIENNK--VDLREYPNVPKDQKEVVLSSVQDEFFRANM 285
Query: 318 HIHIADASERLYDKMNNFVSKNKAAQLHSRDGGEISTKDLQKIVQALPQYGEQVEKLTLH 377
+ D + +++F +K +Q S D+ K + P+Y + +T H
Sbjct: 286 FENFGDLGMNIKRMVDDFQHLSKTSQ------NIQSISDMSKFLSNYPEYRKTHGNVTKH 339
Query: 378 IEIAGKINKFIREYGLRDIGQVEQDLVF--GDAAAKEVISILRSKQDMSPENKLRLLIIY 435
+ + ++++ + E + I Q EQ+L G AAA E ++ L + + +S ++LRL+++Y
Sbjct: 340 VALVSEMSRIVEERKIMLISQTEQELACTSGQAAAFEAVTSLLNNESVSDIDRLRLVLLY 399
Query: 436 AIVYPEKFEGDKGEKLMQL 454
A+ ++E + +LMQL
Sbjct: 400 AL----RYEKESPVQLMQL 414
>Os03g0620800 Similar to SEC1-family transport protein SLY1 (AtSLY1)
Length = 623
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 95/417 (22%), Positives = 182/417 (43%), Gaps = 33/417 (7%)
Query: 38 ETKSSWKVLIMDKFTVRIMAYACKMAEITDAGISLVEDLFKRREPMPSMDAIYFLQPLKE 97
E + ++K+L+MD V ++A ++ E+ G++L ++ K R+ +P A+Y L+P
Sbjct: 38 EEEEAYKILVMDSPCVALLAPVLRVGELRRHGVTLHLNIDKARQQVPDAPAVYLLRPTAA 97
Query: 98 NVIMLLSDMSGRCPLYRKAYIFFSSPIPKELVSYIKNDSSVIP---RIGALREMNLEFFA 154
NV + +D + LY ++ FS+ +P+ L+ + + ++ R+ + + L+F
Sbjct: 98 NVDRVAADAA--AGLYASFHLNFSTCVPRALLERLASATAASRSAHRVARVADQYLDFVC 155
Query: 155 IDMQGFTTDHDMAFTDLYSAQHNSKKFNDTISTMATRIATTFASLKEFPCVRYRAPKGTD 214
++ F+ A+ L + +A + A+L P +R A G
Sbjct: 156 LEEGLFSLAQPRAYVALNDPAAAEADITALVDAIALGLFCVVATLGAVPVIRC-AGGGPA 214
Query: 215 PMTTPKFDMVPKWLATAVWDIVSKYKST-IPEFPQKETCELLIVDRPIDQIAPVIHEWTY 273
M D + A ++ ++ ST + F + C + DR + + H+W+Y
Sbjct: 215 EMVAAALDARLRDHLIAKPNLFTEAASTAVASFQRPLLC---LFDRNFELSVGIQHDWSY 271
Query: 274 DAMCHDLLEMDGQKYIYEVSKAGSEPERKEALLEDHDPLWVE---LRHIHIADASERLYD 330
+ HD+L + K PE+ + L+D DP WV L+ +A+ E
Sbjct: 272 RPLVHDVLGLKSNKL--------KLPEKYD--LDDTDPFWVANSWLQFPKVAEEIEAQLA 321
Query: 331 KMNNFVSKNKAAQLHSRDGGEI-------STKDLQKIVQALPQYGEQVEKLTLHIEIAGK 383
K V + RDG E +T+ L V +LP+ E+ + + H IA
Sbjct: 322 KYKQDVDEVNQRTGGGRDGVEFDGTDLIGNTRHLMNAVNSLPELTERKKMIDKHTNIATA 381
Query: 384 INKFIREYGLRDIGQVEQD-LVFGDAAAKEVISILRSKQDMSPENKLRLLIIYAIVY 439
+ I+ L + E LV G +++++LR + + E+KLRL + Y + +
Sbjct: 382 LLGHIKGRSLDGYFECENSMLVDGTLDRTKLMNLLRG--NGTKEDKLRLAVTYLLSF 436
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,368,670
Number of extensions: 709182
Number of successful extensions: 1520
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1506
Number of HSP's successfully gapped: 5
Length of query: 522
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 417
Effective length of database: 11,553,331
Effective search space: 4817739027
Effective search space used: 4817739027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)