Os04g0252400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Sec1p-like protein 1 (Fragment).
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Os04g0252400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Sec1p-like protein 1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108.29 | 0.489 | 6.8 | 1.78 | 0.725 | 1.16 | -1.45 | -1.41 | 0.117 | 18.3 | 24.6 | 12 | -- | -- |
| 109.13 | 0.487 | 6.78 | 1.95 | 0.734 | 1.03 | -1.57 | -- | 0.163 | 18.1 | 24.53 | 12 | -- | -- |
| 113.35 | 0.496 | 6.81 | 1.75 | 0.73 | 1.15 | -- | -1.96 | 0.1 | 18.3 | 24.74 | 12 | -- | -- |
| 115.2 | 0.5 | 6.78 | 1.98 | 0.745 | 0.968 | -- | -- | 0.169 | 18.2 | 24.58 | 12 | -- | -- |
| 133.71 | 0.539 | 6.8 | 1.47 | -- | 1.57 | -- | -2.51 | 0.00373 | -- | 24.2 | 149 | -- | -- |
| 126.35 | 0.527 | 6.76 | 2.13 | 1.05 | -- | -1.16 | -- | 0.273 | 17.2 | -- | -- | -- | -- |
| 129.69 | 0.533 | 6.76 | 2.13 | 1.04 | -- | -- | -- | 0.268 | 17.1 | -- | -- | -- | -- |
| 137.13 | 0.545 | 6.78 | 1.88 | -- | 1.36 | -- | -- | 0.103 | -- | 24.1 | 149 | -- | -- |
| 208.72 | 0.673 | 6.86 | -- | 0.638 | 1.55 | -- | -- | -0.167 | 18.9 | 21.44 | 21 | -- | -- |
| 186.4 | 0.638 | 6.75 | 2.1 | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
| 249.74 | 0.739 | 6.81 | -- | 1 | -- | -- | -- | 0.0302 | 17.2 | -- | -- | -- | -- |
| 217.61 | 0.687 | 6.86 | -- | -- | 1.95 | -- | -- | -0.249 | -- | 17.9 | 262 | -- | -- |
| 302.4 | 0.812 | 6.8 | -- | -- | -- | -- | -- | 0.0088 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 2 | 100.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 21 | 103.87 | temperature | 20 | 270 | > th | dose dependent | sin | 5 | NA |
| 31 | 104.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 32 | 104.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 39 | 105.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 7 |
| 59 | 105.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 62 | 105.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 11 |
| 80 | 106.26 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 98 | 106.50 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 111 | 106.75 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 118 | 106.86 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 13 |
| 131 | 107.03 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 4 |
| 133 | 107.05 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 6 |
| 161 | 107.38 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 2 |
| 175 | 107.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 177 | 107.53 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 202 | 107.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 19 |
| 203 | 107.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 208 | 107.77 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 214 | 107.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 21 |
| 218 | 107.92 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 244 | 108.09 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 10 |
| 262 | 108.20 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 274 | 108.25 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 283 | 108.29 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 326 | 108.49 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 344 | 108.58 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 347 | 108.58 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 348 | 108.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 390 | 108.72 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 10 |
| 515 | 109.09 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 522 | 109.11 | temperature | 25 | 90 | > th | dose independent | rect. | 3 | 16 |
| 530 | 109.13 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 546 | 109.21 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 558 | 109.24 | temperature | 10 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 586 | 109.34 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 595 | 109.37 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 1 |
| 674 | 109.59 | temperature | 25 | 10 | > th | dose independent | rect. | 23 | 21 |
| 712 | 109.70 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 779 | 109.87 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 12 |
| 811 | 109.96 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 19 |
| 834 | 110.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 853 | 110.06 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 917 | 110.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 13 |
| 920 | 110.20 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 16 |
| 935 | 110.24 | temperature | 30 | 10 | < th | dose dependent | sin | 1 | NA |
| 970 | 110.32 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 992 | 110.39 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 20 |