BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0252400 Os04g0252400|AK119369
(544 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G12360.1 | chr1:4201172-4206144 FORWARD LENGTH=667 709 0.0
AT1G02010.1 | chr1:348046-352197 FORWARD LENGTH=674 625 e-179
AT4G12120.1 | chr4:7256687-7260914 REVERSE LENGTH=663 624 e-179
AT1G77140.1 | chr1:28984163-28987681 FORWARD LENGTH=570 75 8e-14
>AT1G12360.1 | chr1:4201172-4206144 FORWARD LENGTH=667
Length = 666
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/504 (69%), Positives = 419/504 (83%), Gaps = 5/504 (0%)
Query: 1 MNLEYFAIDSQGFTTDHDKALEELFSENAEGSLKYNSCLNMMATRIATVFASMREFPRVH 60
MNLE+FAIDSQGF TDH++ALE+LF + E S K ++CLN+MA+RIATVFAS+REFP V
Sbjct: 148 MNLEFFAIDSQGFITDHERALEDLFGDE-ETSRKGDACLNVMASRIATVFASLREFPAVR 206
Query: 61 YRVARTIDASTLTTLRDLAPTKLAAGVWNCLARFKAMIPEFPQTETCELLIVDRSIDQIA 120
YR A+++DAST+TTLRDL PTKLAAG+WNCLA+ K I FPQTETCELLI+DRSIDQIA
Sbjct: 207 YRAAKSLDASTMTTLRDLIPTKLAAGIWNCLAKHKQSIENFPQTETCELLILDRSIDQIA 266
Query: 121 PIIHEWTYDAMCHDLLCMDGNKYVQQVPSKSGSGTENKEVLLEDHDPIWLELRHVHIANA 180
P+IHEWTYDAMCHDLL M+GNKYV +PSKSG E K+VLLE+HDPIWLELRH HIA+A
Sbjct: 267 PVIHEWTYDAMCHDLLNMEGNKYVHVIPSKSGGQPEKKDVLLEEHDPIWLELRHAHIADA 326
Query: 181 SERLHEKMTNFVSKNKAAQLHQARNGGDLSTKELQKMVQALPQYSDQIDKLALHVEIAGK 240
SERLH+KMTNF+SKNKAAQL R+G +LST++LQKMVQALPQYS+QIDKL+LHVEIA K
Sbjct: 327 SERLHDKMTNFLSKNKAAQLQGKRDGAELSTRDLQKMVQALPQYSEQIDKLSLHVEIARK 386
Query: 241 LNSTIKEQQLKDVGQLEQDLVFGDAGTKELINFFRTHLDISRENKLRLLMVYAAINPDKT 300
LN I+EQ L+++GQLEQDLVFGDAG K++I + T + SRE KLRLLM+ A I P+K
Sbjct: 387 LNDLIREQGLRELGQLEQDLVFGDAGMKDVIKYLSTQEEASREGKLRLLMILATIYPEKF 446
Query: 301 RSDKGAKLMQLAGLSADDMIAVSNMRCL-CGHDSKKSSAGGFTLKFDLRKKRHGIRKERI 359
+KG LM+LA LS+DDM AV+NM L D+KK++ GGFTLKFDL KK+ +RKER
Sbjct: 447 EGEKGQNLMKLAKLSSDDMTAVNNMSLLGSAVDAKKNTPGGFTLKFDLHKKKRAVRKER- 505
Query: 360 GEESKWMLSRFYPILEELIEKLSKGELPKDEYHYLNDPSPSFRG-IPSASTQTSPAHQPA 418
EE+ W LSRFYP++EELIEKLSKGELPK+++ +NDPSPSF G +S +S Q A
Sbjct: 506 QEEAAWQLSRFYPMIEELIEKLSKGELPKEDFPCMNDPSPSFHGSTSLSSAASSSQGQAA 565
Query: 419 QSMRSRRTGGTWARPRDSDDGYSSDSVLKHTSSNSRKLGQRLFVFVIGGATRSELCAAHK 478
QSMRSRRT TWA+PR SDDGYSSDSVL+H SS+ RK+GQR+FVF++GGATRSEL HK
Sbjct: 566 QSMRSRRT-PTWAKPRGSDDGYSSDSVLRHASSDFRKMGQRIFVFIVGGATRSELKVCHK 624
Query: 479 LSSKLKREIILGSSSLDDPPQFIT 502
LS+KLKRE+ILGS+SLDDPPQFIT
Sbjct: 625 LSTKLKREVILGSTSLDDPPQFIT 648
>AT1G02010.1 | chr1:348046-352197 FORWARD LENGTH=674
Length = 673
Score = 625 bits (1613), Expect = e-179, Method: Compositional matrix adjust.
Identities = 313/510 (61%), Positives = 394/510 (77%), Gaps = 17/510 (3%)
Query: 1 MNLEYFAIDSQGFTTDHDKALEELFSENAEGSLKYNSCLNMMATRIATVFASMREFPRVH 60
MN+EYF ID+QGF TDH++ALE L++E+AE S ++ CLN+MATRIATVFAS++E P V
Sbjct: 150 MNMEYFPIDNQGFLTDHEQALETLYAEDAENSRHFHICLNIMATRIATVFASLKELPFVR 209
Query: 61 YRVARTIDASTLTTLRDLAPTKLAAGVWNCLARFKAMIPEFPQTETCELLIVDRSIDQIA 120
YR A++ T RDL P+KLAA +W+C++++KA IP FPQTETCELLIVDRS+DQIA
Sbjct: 210 YRAAKS------TASRDLVPSKLAAAIWDCISKYKA-IPNFPQTETCELLIVDRSVDQIA 262
Query: 121 PIIHEWTYDAMCHDLLCMDGNKYVQQVPSKSGSGTENKEVLLEDHDPIWLELRHVHIANA 180
PIIHEWTYDAMCHDLL M+GNK+V +VPSK+G E KE++LEDHDP+WLELRH HIA+A
Sbjct: 263 PIIHEWTYDAMCHDLLDMEGNKHVIEVPSKTGGPPEKKEIVLEDHDPVWLELRHTHIADA 322
Query: 181 SERLHEKMTNFVSKNKAAQLHQARNGGDLSTKELQKMVQALPQYSDQIDKLALHVEIAGK 240
SERLHEKMTNF SKNKAAQ+ ++R+G +LST++LQK+VQALPQY +Q+DKL+ HVE+AGK
Sbjct: 323 SERLHEKMTNFASKNKAAQM-RSRDGSELSTRDLQKIVQALPQYGEQVDKLSTHVELAGK 381
Query: 241 LNSTIKEQQLKDVGQLEQDLVFGDAGTKELINFFRTHLDISRENKLRLLMVYAAINPDKT 300
+N I++ L+D+GQLEQDLVFGDAG K++INF RT+ D + ENKLRLLM+YA + P+K
Sbjct: 382 INRIIRDTGLRDLGQLEQDLVFGDAGAKDVINFLRTNQDTNPENKLRLLMIYATVYPEKF 441
Query: 301 RSDKGAKLMQLAGLSADDMIAVSNMRCLCGHDSKKSSAGGFTLKFDLRKKRHGIRKERIG 360
DKG KLMQLA LS DM +SNM+ + G K+ +G F+LKFD K + RK+R G
Sbjct: 442 EGDKGVKLMQLARLSPVDMKVISNMQLIAGSPENKAKSGSFSLKFDAGKTKQANRKDRSG 501
Query: 361 EESKWMLSRFYPILEELIEKLSKGELPKDEYHYLNDPS---PSFRGIPSASTQTSPAHQP 417
EE W L RFYP++EEL+EKL KG+L K +Y +N S S S ++P P
Sbjct: 502 EEETWQLFRFYPMIEELLEKLVKGDLSKSDYLCMNQSSHKEESEARTGSVRKSSAPTAVP 561
Query: 418 AQ-----SMRSRRTGGTWARPRDSDDGYSSDSVLKHTSSNSRKLGQRLFVFVIGGATRSE 472
+ SMRSRRT TWARP SDDGYSSDSVLK S+ +KLGQR+FVF+IGGATRSE
Sbjct: 562 ERKATPHSMRSRRT-ATWARPHSSDDGYSSDSVLKSASTEFKKLGQRIFVFIIGGATRSE 620
Query: 473 LCAAHKLSSKLKREIILGSSSLDDPPQFIT 502
L HKL+S L+RE++LGS+S DDPPQ+IT
Sbjct: 621 LRVCHKLTSSLRREVVLGSTSFDDPPQYIT 650
>AT4G12120.1 | chr4:7256687-7260914 REVERSE LENGTH=663
Length = 662
Score = 624 bits (1610), Expect = e-179, Method: Compositional matrix adjust.
Identities = 311/505 (61%), Positives = 386/505 (76%), Gaps = 11/505 (2%)
Query: 1 MNLEYFAIDSQGFTTDHDKALEELFSENAEGSLKYNSCLNMMATRIATVFASMREFPRVH 60
MNLEY ++D QGF T+++ ALEELF ++ E + ++CLN++A RIATV AS++E+P V
Sbjct: 148 MNLEYISMDIQGFVTNNENALEELFCDD-ENHQRADACLNVVAKRIATVLASLKEYPFVR 206
Query: 61 YRVARTIDASTLTTLRDLAPTKLAAGVWNCLARFKAMIPEFPQTETCELLIVDRSIDQIA 120
YR A+ +DA+T+TT R+L PTKLAA VWNCLAR+K I +FPQTETCELLI+DRSIDQIA
Sbjct: 207 YRGAKALDATTMTTYRELIPTKLAASVWNCLARYKQTIEDFPQTETCELLILDRSIDQIA 266
Query: 121 PIIHEWTYDAMCHDLLCMDGNKYVQQVPSKSGSGTENKEVLLEDHDPIWLELRHVHIANA 180
P+IHEWTYDAMCHDLL M+GNKY +VPSK+G E KEVLL++ D IW+ELR HIA+A
Sbjct: 267 PLIHEWTYDAMCHDLLNMEGNKYTHEVPSKTGDKPEKKEVLLDEEDSIWVELRDAHIADA 326
Query: 181 SERLHEKMTNFVSKNKAAQL-HQARNGGDLSTKELQKMVQALPQYSDQIDKLALHVEIAG 239
SERLHEKMTNFVSKNKAAQL H +++ GDLS+K+LQKMV ALPQYS+QIDKL+LHVEIA
Sbjct: 327 SERLHEKMTNFVSKNKAAQLKHSSKDFGDLSSKDLQKMVHALPQYSEQIDKLSLHVEIAR 386
Query: 240 KLNSTIKEQQLKDVGQLEQDLVFGDAGTKELINFFRTHLDISRENKLRLLMVYAAINPDK 299
+N TI EQ L+D+GQLEQDLVFGDAG K++I F T+ IS E+KLRL+M+ AAI P K
Sbjct: 387 TINRTIMEQGLRDLGQLEQDLVFGDAGRKDVIKFLSTNHIISHESKLRLIMIVAAIYPKK 446
Query: 300 TRSDKGAKLMQLAGLSADDMIAVSNMRCL--CGHDSKKSSAGGFTLKFDLRKKRHGIRKE 357
+KG K+M+LA LS DD++AV+NMR L + KKS+ G F LKFD+ K + R++
Sbjct: 447 FEGEKGRKMMELAKLSGDDVVAVNNMRLLGPVHTECKKSTTGSFPLKFDVLKTKRAARRD 506
Query: 358 RIGEESKWMLSRFYPILEELIEKLSKGELPKDEYHYLNDPSPSFRGIPSASTQTSPAHQP 417
R+GE W LSRFYPI+EEL+EKLSKG LPK +Y +N+P P+F S SP+ P
Sbjct: 507 RVGETQTWQLSRFYPIVEELVEKLSKGHLPKQDYPCMNEPKPTF-----YSGSLSPSASP 561
Query: 418 AQSMRSRRTGGTWARPRDSDDGYSSDSVLKHTSSNSRKLGQRLFVFVIGGATRSELCAAH 477
SRRT TWAR SDDGY SDSVL SS ++ GQR+FVF++GGATRSEL H
Sbjct: 562 VLP-HSRRT-PTWARRHLSDDGYFSDSVLGRASSGFKRKGQRIFVFIVGGATRSELRVCH 619
Query: 478 KLSSKLKREIILGSSSLDDPPQFIT 502
KL+ KL RE+ILGSSS DP F+T
Sbjct: 620 KLTEKLDREVILGSSSFLDPLTFLT 644
>AT1G77140.1 | chr1:28984163-28987681 FORWARD LENGTH=570
Length = 569
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 79/360 (21%), Positives = 162/360 (45%), Gaps = 38/360 (10%)
Query: 46 IATVFASMREFPRVHYRVARTIDASTLTTLRDLAPTKLAAGVWNCLARFKAMIPEFPQTE 105
IA VF +++ P + Y+ RT D + ++A + + ++ + +F +TE
Sbjct: 170 IAAVFLALKRRPVIRYQ--RTSDTAK----------RIAHETAKLMYQHESALFDFRRTE 217
Query: 106 TCELL-IVDRSIDQIAPIIHEWTYDAMCHDLLCMDGNKYVQQVPSKS-GSGTENKE---V 160
+ LL ++DR D + P++++WTY AM H+L+ + NK V KS GS ++++ V
Sbjct: 218 SSPLLLVIDRRDDPVTPLLNQWTYQAMVHELIGLQDNK----VDLKSIGSLPKDQQVEVV 273
Query: 161 LLEDHDPIWLELRHVHIANASERLHEKMTNFVSKNKAAQLHQARNGGDLSTKELQKMVQA 220
L + D + + + + + + +F K+ Q Q + +++ + V
Sbjct: 274 LSSEQDAFFKSNMYENFGDIGMNIKRMVDDFQQVAKSNQNIQ-------TVEDMARFVDN 326
Query: 221 LPQYSDQIDKLALHVEIAGKLNSTIKEQQLKDVGQLEQDLV--FGDAGTKELINFFRTHL 278
P+Y ++ HV + +++ ++ ++L V Q EQDL G E + +
Sbjct: 327 YPEYKKMQGNVSKHVTLVTEMSKLVEARKLMTVSQTEQDLACNGGQGAAYEAVTDLLNNE 386
Query: 279 DISRENKLRLLMVYAAINPDKTRSDKGAKLMQLAG--LSADDMIAVSNMRCLCGHDSKKS 336
+S ++LRL+M+YA + + +LMQL S ++ L +
Sbjct: 387 SVSDIDRLRLVMLYAL----RYEKENPVQLMQLFNKLASRSPKYKPGLVQFLLKQAGVEK 442
Query: 337 SAGGFTLKFDLRKKRHGIRKERIGEESKWMLSRFYPILEELIEKLSKGELPKDEYHYLND 396
G DL + + G E+ + ++ P+L + +E +++G L +Y ++ D
Sbjct: 443 RTGDLFGNRDLLNIARNMARGLKGVENVY--TQHQPLLFQTMESITRGRLRDVDYPFVGD 500
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,594,521
Number of extensions: 496247
Number of successful extensions: 1364
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1352
Number of HSP's successfully gapped: 4
Length of query: 544
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 441
Effective length of database: 8,282,721
Effective search space: 3652679961
Effective search space used: 3652679961
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)