BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0252400 Os04g0252400|AK119369
(544 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0252400 Similar to Sec1p-like protein 1 (Fragment) 1112 0.0
Os06g0135900 Similar to Sec1p-like protein 2 (Fragment) 478 e-135
Os02g0452500 Similar to Sec1p-like protein 1 (Fragment) 431 e-121
Os02g0437800 Similar to Vacuolar protein-sorting protein 45... 72 9e-13
>Os04g0252400 Similar to Sec1p-like protein 1 (Fragment)
Length = 544
Score = 1112 bits (2877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/531 (100%), Positives = 531/531 (100%)
Query: 1 MNLEYFAIDSQGFTTDHDKALEELFSENAEGSLKYNSCLNMMATRIATVFASMREFPRVH 60
MNLEYFAIDSQGFTTDHDKALEELFSENAEGSLKYNSCLNMMATRIATVFASMREFPRVH
Sbjct: 1 MNLEYFAIDSQGFTTDHDKALEELFSENAEGSLKYNSCLNMMATRIATVFASMREFPRVH 60
Query: 61 YRVARTIDASTLTTLRDLAPTKLAAGVWNCLARFKAMIPEFPQTETCELLIVDRSIDQIA 120
YRVARTIDASTLTTLRDLAPTKLAAGVWNCLARFKAMIPEFPQTETCELLIVDRSIDQIA
Sbjct: 61 YRVARTIDASTLTTLRDLAPTKLAAGVWNCLARFKAMIPEFPQTETCELLIVDRSIDQIA 120
Query: 121 PIIHEWTYDAMCHDLLCMDGNKYVQQVPSKSGSGTENKEVLLEDHDPIWLELRHVHIANA 180
PIIHEWTYDAMCHDLLCMDGNKYVQQVPSKSGSGTENKEVLLEDHDPIWLELRHVHIANA
Sbjct: 121 PIIHEWTYDAMCHDLLCMDGNKYVQQVPSKSGSGTENKEVLLEDHDPIWLELRHVHIANA 180
Query: 181 SERLHEKMTNFVSKNKAAQLHQARNGGDLSTKELQKMVQALPQYSDQIDKLALHVEIAGK 240
SERLHEKMTNFVSKNKAAQLHQARNGGDLSTKELQKMVQALPQYSDQIDKLALHVEIAGK
Sbjct: 181 SERLHEKMTNFVSKNKAAQLHQARNGGDLSTKELQKMVQALPQYSDQIDKLALHVEIAGK 240
Query: 241 LNSTIKEQQLKDVGQLEQDLVFGDAGTKELINFFRTHLDISRENKLRLLMVYAAINPDKT 300
LNSTIKEQQLKDVGQLEQDLVFGDAGTKELINFFRTHLDISRENKLRLLMVYAAINPDKT
Sbjct: 241 LNSTIKEQQLKDVGQLEQDLVFGDAGTKELINFFRTHLDISRENKLRLLMVYAAINPDKT 300
Query: 301 RSDKGAKLMQLAGLSADDMIAVSNMRCLCGHDSKKSSAGGFTLKFDLRKKRHGIRKERIG 360
RSDKGAKLMQLAGLSADDMIAVSNMRCLCGHDSKKSSAGGFTLKFDLRKKRHGIRKERIG
Sbjct: 301 RSDKGAKLMQLAGLSADDMIAVSNMRCLCGHDSKKSSAGGFTLKFDLRKKRHGIRKERIG 360
Query: 361 EESKWMLSRFYPILEELIEKLSKGELPKDEYHYLNDPSPSFRGIPSASTQTSPAHQPAQS 420
EESKWMLSRFYPILEELIEKLSKGELPKDEYHYLNDPSPSFRGIPSASTQTSPAHQPAQS
Sbjct: 361 EESKWMLSRFYPILEELIEKLSKGELPKDEYHYLNDPSPSFRGIPSASTQTSPAHQPAQS 420
Query: 421 MRSRRTGGTWARPRDSDDGYSSDSVLKHTSSNSRKLGQRLFVFVIGGATRSELCAAHKLS 480
MRSRRTGGTWARPRDSDDGYSSDSVLKHTSSNSRKLGQRLFVFVIGGATRSELCAAHKLS
Sbjct: 421 MRSRRTGGTWARPRDSDDGYSSDSVLKHTSSNSRKLGQRLFVFVIGGATRSELCAAHKLS 480
Query: 481 SKLKREIILGSSSLDDPPQFITVSFLFMSPLQYACCTKNLLTCYYLQKLKM 531
SKLKREIILGSSSLDDPPQFITVSFLFMSPLQYACCTKNLLTCYYLQKLKM
Sbjct: 481 SKLKREIILGSSSLDDPPQFITVSFLFMSPLQYACCTKNLLTCYYLQKLKM 531
>Os06g0135900 Similar to Sec1p-like protein 2 (Fragment)
Length = 522
Score = 478 bits (1230), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/376 (60%), Positives = 293/376 (77%), Gaps = 5/376 (1%)
Query: 1 MNLEYFAIDSQGFTTDHDKALEELFSENAEGSLKYNSCLNMMATRIATVFASMREFPRVH 60
MNLE+FAID QGFTTDHD A +L+S S K+N ++ MATRIAT FAS++EFP V
Sbjct: 148 MNLEFFAIDMQGFTTDHDMAFTDLYSAQ-HNSKKFNDTISTMATRIATTFASLKEFPCVR 206
Query: 61 YRVARTIDASTLTTLRDLAPTKLAAGVWNCLARFKAMIPEFPQTETCELLIVDRSIDQIA 120
YR + D T T D+ P LA VW+ ++++K+ IPEFPQ ETCELLIVDR IDQIA
Sbjct: 207 YRAPKGTDPMT-TPKFDMVPKWLATAVWDIVSKYKSTIPEFPQKETCELLIVDRPIDQIA 265
Query: 121 PIIHEWTYDAMCHDLLCMDGNKYVQQVPSKSGSGTENKEVLLEDHDPIWLELRHVHIANA 180
P+IHEWTYDAMCHDLL MDG KY+ +V SK+GS E KE LLEDHDP+W+ELRH+HIA+A
Sbjct: 266 PVIHEWTYDAMCHDLLEMDGQKYIYEV-SKAGSEPERKEALLEDHDPLWVELRHIHIADA 324
Query: 181 SERLHEKMTNFVSKNKAAQLHQARNGGDLSTKELQKMVQALPQYSDQIDKLALHVEIAGK 240
SERL++KM NFVSKNKAAQLH +R+GG++STK+LQK+VQALPQY +Q++KL LH+EIAGK
Sbjct: 325 SERLYDKMNNFVSKNKAAQLH-SRDGGEISTKDLQKIVQALPQYGEQVEKLTLHIEIAGK 383
Query: 241 LNSTIKEQQLKDVGQLEQDLVFGDAGTKELINFFRTHLDISRENKLRLLMVYAAINPDKT 300
+N I+E L+D+GQ+EQDLVFGDA KE+I+ R+ D+S ENKLRLL++YA + P+K
Sbjct: 384 INKFIREYGLRDIGQVEQDLVFGDAAAKEVISILRSKQDMSPENKLRLLIIYAIVYPEKF 443
Query: 301 RSDKGAKLMQLAGLSADDMIAVSNMRCLCGHDSKKSS-AGGFTLKFDLRKKRHGIRKERI 359
DKG KLMQLA L D+M A++++R L G D+KK+S GGF+LKFD +KK++ R ER
Sbjct: 444 EGDKGEKLMQLAKLPHDEMDAINSLRYLVGSDTKKASRPGGFSLKFDAQKKKNAARTERQ 503
Query: 360 GEESKWMLSRFYPILE 375
+ W LSRF+P++E
Sbjct: 504 DGDETWALSRFFPLIE 519
>Os02g0452500 Similar to Sec1p-like protein 1 (Fragment)
Length = 241
Score = 431 bits (1107), Expect = e-121, Method: Compositional matrix adjust.
Identities = 195/237 (82%), Positives = 219/237 (92%)
Query: 1 MNLEYFAIDSQGFTTDHDKALEELFSENAEGSLKYNSCLNMMATRIATVFASMREFPRVH 60
MNLEYFAIDSQGFTTDH++ALEELFSENA S KYN+CLN MATRI+TVFASMREFPRVH
Sbjct: 1 MNLEYFAIDSQGFTTDHERALEELFSENALDSHKYNACLNTMATRISTVFASMREFPRVH 60
Query: 61 YRVARTIDASTLTTLRDLAPTKLAAGVWNCLARFKAMIPEFPQTETCELLIVDRSIDQIA 120
YRVA+TIDAS TTLRDL PTKLAA VWNCL++ K IP++PQTETCELLIVDRS+DQIA
Sbjct: 61 YRVAKTIDASVTTTLRDLVPTKLAAAVWNCLSKLKTSIPDYPQTETCELLIVDRSVDQIA 120
Query: 121 PIIHEWTYDAMCHDLLCMDGNKYVQQVPSKSGSGTENKEVLLEDHDPIWLELRHVHIANA 180
PIIHEWTYDAMCHDLLCMDGNKYV +VPSK+GS TE K+VLLEDHDPIW+ELRH HIA+A
Sbjct: 121 PIIHEWTYDAMCHDLLCMDGNKYVHEVPSKNGSSTEKKDVLLEDHDPIWVELRHAHIADA 180
Query: 181 SERLHEKMTNFVSKNKAAQLHQARNGGDLSTKELQKMVQALPQYSDQIDKLALHVEI 237
SERLH+KM+NFVSKNKAAQL QAR GG++S ++LQKMVQALPQYSDQI+KL+LHVE+
Sbjct: 181 SERLHDKMSNFVSKNKAAQLQQARTGGEISNRDLQKMVQALPQYSDQIEKLSLHVEV 237
>Os02g0437800 Similar to Vacuolar protein-sorting protein 45 homolog (AtVPS45)
Length = 567
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 129/271 (47%), Gaps = 31/271 (11%)
Query: 46 IATVFASMREFPRVHYRVARTIDASTLTTLRDLAPTKLAAGVWNCLARFKAMIPEFPQTE 105
IA+VF +++ P + Y+ RT D + ++A + ++ + +F +TE
Sbjct: 170 IASVFLALKRRPVIRYQ--RTSDVAK----------RIAQETARLMYEQESGLFDFRRTE 217
Query: 106 TCELL-IVDRSIDQIAPIIHEWTYDAMCHDLLCMDGNKY-VQQVPSKSGSGTENKEVLLE 163
LL ++DR D + P++++WTY AM H+L+ ++ NK +++ P+ + KEV+L
Sbjct: 218 NSSLLLVIDRRDDPVTPLLNQWTYQAMVHELIGIENNKVDLREYPNVP---KDQKEVVLS 274
Query: 164 D-HDPIWLELRHVHIANASERLHEKMTNFVSKNKAAQLHQARNGGDLSTKELQKMVQALP 222
D + + + + + +F +K +Q Q S ++ K + P
Sbjct: 275 SVQDEFFRANMFENFGDLGMNIKRMVDDFQHLSKTSQNIQ-------SISDMSKFLSNYP 327
Query: 223 QYSDQIDKLALHVEIAGKLNSTIKEQQLKDVGQLEQDL--VFGDAGTKELINFFRTHLDI 280
+Y + HV + +++ ++E+++ + Q EQ+L G A E + + +
Sbjct: 328 EYRKTHGNVTKHVALVSEMSRIVEERKIMLISQTEQELACTSGQAAAFEAVTSLLNNESV 387
Query: 281 SRENKLRLLMVYAAINPDKTRSDKGAKLMQL 311
S ++LRL+++YA + + +LMQL
Sbjct: 388 SDIDRLRLVLLYAL----RYEKESPVQLMQL 414
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,099,680
Number of extensions: 777472
Number of successful extensions: 2452
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2447
Number of HSP's successfully gapped: 4
Length of query: 544
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 438
Effective length of database: 11,501,117
Effective search space: 5037489246
Effective search space used: 5037489246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)