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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0135900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Sec1p-like protein 2 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.0271) R2 : 0.00998
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.122 (0.057) R2dN8 : 0.0129 R2N8 : 0.00998
σ : 0.51
deviance : 119.38
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
95.46 0.459 3.26 -0.688 0.208 0.736 -0.754 -1.55 -0.149 1.48 93.87 238 -- --
96.92 0.459 3.25 -0.697 0.217 0.852 -0.868 -- -0.154 1.96 94.31 275 -- --
97.61 0.46 3.26 -0.657 0.202 0.689 -- -1.94 -0.137 1.94 93.76 238 -- --
99.88 0.465 3.25 -0.665 0.23 0.833 -- -- -0.157 1.83 94.45 283 -- --
99.91 0.466 3.25 -0.666 -- 0.737 -- -1.81 -0.12 -- 93.38 216 -- --
100.61 0.47 3.26 -0.672 0.304 -- -0.895 -- -0.206 2.78 -- -- -- --
103.33 0.476 3.26 -0.651 0.306 -- -- -- -0.201 3.16 -- -- -- --
102.68 0.472 3.25 -0.675 -- 0.796 -- -- -0.137 -- 93.83 232 -- --
111.33 0.491 3.24 -- 0.241 0.869 -- -- -0.0892 2 94.77 305 -- --
108.65 0.487 3.26 -0.638 -- -- -- -- -0.193 -- -- -- -- --
114.49 0.501 3.24 -- 0.293 -- -- -- -0.129 3.15 -- -- -- --
114.39 0.498 3.23 -- -- 0.933 -- -- -0.0752 -- 94.49 276 -- --
119.38 0.51 3.24 -- -- -- -- -- -0.122 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.71 humidity 90 10 > th dose dependent rect. 5 4
5 94.76 humidity 90 10 > th dose independent rect. 5 3
18 94.93 humidity 90 10 > th dose dependent rect. 5 15
24 95.02 temperature 25 90 > th dose dependent rect. 3 1
25 95.07 humidity 90 10 > th dose dependent rect. 5 9
35 95.18 humidity 90 270 > th dose dependent rect. 1 6
45 95.39 temperature 25 90 > th dose independent rect. 3 1
59 95.44 humidity 90 10 > th dose dependent sin 0 NA
71 95.51 humidity 90 270 > th dose dependent rect. 5 1
85 95.64 humidity 90 10 > th dose independent rect. 5 1
95 95.73 atmosphere 1000 10 < th dose independent rect. 3 1
102 95.73 atmosphere 1000 10 < th dose dependent rect. 3 1
146 95.96 humidity 90 10 > th dose independent rect. 2 7
217 96.48 atmosphere 1010 90 < th dose dependent rect. 16 16
233 96.56 humidity 90 270 > th dose dependent rect. 1 20
234 96.58 humidity 90 270 > th dose dependent rect. 1 17
238 96.59 humidity 90 10 > th dose independent rect. 5 15
244 96.62 humidity 80 14400 > th dose independent rect. 7 1
250 96.64 humidity 90 270 > th dose dependent rect. 1 14
261 96.68 radiation 30 30 < th dose independent rect. 1 10
271 96.73 humidity 50 10 > th dose dependent rect. 1 10
283 96.76 humidity 90 10 > th dose dependent rect. 2 20
284 96.77 humidity 90 10 > th dose independent rect. 2 18
293 96.79 temperature 25 10 < th dose independent rect. 13 21
303 96.81 humidity 90 10 > th dose dependent rect. 2 18
306 96.82 temperature 25 10 < th dose independent rect. 1 7
317 96.85 humidity 90 10 < th dose independent rect. 3 9
337 96.87 humidity 90 10 > th dose independent rect. 5 9
346 96.89 radiation 1 1440 < th dose independent rect. 8 7
349 96.89 humidity 90 10 < th dose independent rect. 3 11
350 96.89 radiation 1 1440 < th dose dependent rect. 8 7
403 96.96 humidity 90 10 > th dose independent sin 3 NA
406 96.96 humidity 50 1440 > th dose independent rect. 2 9
416 96.97 humidity 90 270 > th dose dependent sin 7 NA
420 96.97 atmosphere 1010 270 < th dose dependent rect. 24 6
422 96.97 humidity 90 10 > th dose dependent rect. 2 16
436 96.99 radiation 1 1440 < th dose independent rect. 10 1
442 96.99 radiation 1 1440 < th dose dependent rect. 10 1
460 97.02 humidity 90 270 > th dose independent rect. 1 6
462 97.02 humidity 90 10 > th dose independent rect. 2 16
464 97.02 humidity 90 10 > th dose dependent rect. 2 12
468 97.03 radiation 1 1440 < th dose independent rect. 10 3
469 97.03 humidity 80 14400 > th dose independent rect. 3 6
470 97.03 radiation 1 1440 > th dose independent rect. 8 7
472 97.03 radiation 1 1440 < th dose dependent rect. 10 3
476 97.04 humidity 80 14400 > th dose independent rect. 6 3
479 97.04 humidity 60 30 > th dose independent rect. 12 11
482 97.04 atmosphere 1015 10 < th dose independent rect. 6 23
505 97.06 wind 5 4320 < th dose dependent rect. 18 5
520 97.07 atmosphere 1015 90 < th dose dependent rect. 1 8
523 97.08 wind 3 90 < th dose independent rect. 22 2
524 97.08 humidity 80 14400 > th dose independent rect. 19 2
525 97.08 humidity 80 10 > th dose independent rect. 20 9
534 97.09 wind 3 4320 < th dose dependent rect. 22 1
557 97.10 atmosphere 1010 270 < th dose dependent rect. 14 16
561 97.11 temperature 25 10 < th dose independent rect. 5 1
562 97.11 wind 1 270 < th dose independent rect. 3 2
563 97.11 humidity 80 14400 > th dose independent rect. 19 14
587 97.14 humidity 90 10 > th dose independent rect. 2 12
597 97.16 wind 1 14400 > th dose independent rect. 22 1
606 97.17 humidity 80 30 < th dose independent rect. 1 5
611 97.17 humidity 80 10 > th dose independent rect. 22 7
645 97.20 radiation 1 1440 > th dose independent rect. 14 1
654 97.20 humidity 80 30 < th dose dependent rect. 1 5
663 97.21 humidity 60 30 > th dose independent rect. 12 23
664 97.21 wind 3 4320 > th dose dependent rect. 19 2
667 97.21 atmosphere 995 10 > th dose dependent rect. 19 10
672 97.22 wind 5 4320 > th dose independent rect. 17 4
673 97.22 humidity 70 10 > th dose independent rect. 1 9
683 97.23 wind 3 1440 < th dose independent rect. 22 1
691 97.24 humidity 80 14400 < th dose independent rect. 7 1
692 97.24 wind 3 10 < th dose independent rect. 23 2
707 97.25 wind 5 4320 < th dose independent rect. 17 4
733 97.26 atmosphere 1015 270 < th dose independent rect. 2 23
743 97.27 atmosphere 1005 10 < th dose independent rect. 17 16
750 97.27 humidity 90 270 > th dose dependent rect. 13 18
775 97.29 humidity 90 270 > th dose dependent rect. 16 15
779 97.30 wind 5 4320 < th dose independent rect. 19 2
781 97.30 humidity 80 14400 < th dose independent rect. 3 6
802 97.31 wind 1 270 < th dose dependent rect. 3 2
805 97.31 humidity 50 10 > th dose dependent rect. 5 13
806 97.32 wind 7 4320 < th dose independent rect. 17 1
808 97.32 wind 5 4320 > th dose independent rect. 19 2
852 97.35 temperature 15 10 > th dose independent rect. 12 23
874 97.37 wind 3 1440 > th dose independent rect. 22 1
922 97.39 radiation 10 30 < th dose dependent rect. 5 13
934 97.40 humidity 70 14400 > th dose dependent rect. 7 1
944 97.41 humidity 60 30 > th dose independent rect. 1 17
947 97.41 humidity 90 14400 < th dose dependent rect. 7 1
975 97.43 humidity 80 14400 < th dose independent rect. 19 14
983 97.43 radiation 40 30 < th dose dependent rect. 1 10
990 97.44 wind 5 4320 < th dose independent rect. 17 8