Os02g0437800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Vacuolar protein-sorting protein 45 homolog (AtVPS45).
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Os02g0437800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Vacuolar protein-sorting protein 45 homolog (AtVPS45).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.33 | 0.201 | 8.86 | -0.65 | 0.261 | -0.282 | -0.473 | 1.1 | 0.164 | 5.09 | 20.9 | 895 | -- | -- |
| 19.08 | 0.203 | 8.84 | -0.589 | 0.247 | -0.709 | -0.611 | -- | 0.185 | 4.51 | 19.57 | 1327 | -- | -- |
| 18.79 | 0.202 | 8.86 | -0.664 | 0.253 | -0.292 | -- | 1.2 | 0.161 | 5.27 | 20.82 | 1033 | -- | -- |
| 19.78 | 0.207 | 8.84 | -0.64 | 0.245 | -0.633 | -- | -- | 0.185 | 5.35 | 18.68 | 2334 | -- | -- |
| 22.13 | 0.219 | 8.86 | -0.658 | -- | -0.364 | -- | 1.14 | 0.167 | -- | 20.8 | 1089 | -- | -- |
| 22.05 | 0.22 | 8.83 | -0.452 | 0.264 | -- | -0.628 | -- | 0.233 | 4.38 | -- | -- | -- | -- |
| 23.04 | 0.225 | 8.83 | -0.446 | 0.266 | -- | -- | -- | 0.236 | 4.92 | -- | -- | -- | -- |
| 22.97 | 0.223 | 8.85 | -0.638 | -- | -0.686 | -- | -- | 0.176 | -- | 18.66 | 2552 | -- | -- |
| 27.55 | 0.244 | 8.82 | -- | 0.236 | -0.366 | -- | -- | 0.271 | 4.71 | 18 | 1225 | -- | -- |
| 26.77 | 0.242 | 8.83 | -0.437 | -- | -- | -- | -- | 0.243 | -- | -- | -- | -- | -- |
| 28.29 | 0.249 | 8.82 | -- | 0.258 | -- | -- | -- | 0.286 | 4.97 | -- | -- | -- | -- |
| 30.71 | 0.258 | 8.82 | -- | -- | -0.461 | -- | -- | 0.278 | -- | 18 | 1146 | -- | -- |
| 31.8 | 0.263 | 8.82 | -- | -- | -- | -- | -- | 0.292 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.95 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 2 | 18.03 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 3 | 18.03 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 7 | 18.16 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 8 | 18.16 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 9 | 18.16 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 10 | 18.17 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 16 | 18.25 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 17 | 18.25 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 18 | 18.26 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 20 | 18.27 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 4 |
| 21 | 18.28 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 23 | 18.28 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 24 | 18.28 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 7 |
| 26 | 18.30 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 27 | 18.31 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 64 | 18.44 | temperature | 20.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 96 | 18.52 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 12 | 2 |
| 97 | 18.52 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 118 | 18.57 | temperature | 20.0 | 720 | < th | dose dependent | no | NA | NA |
| 127 | 18.58 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 136 | 18.59 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 144 | 18.60 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 24 | 16 |
| 156 | 18.61 | temperature | 20.0 | 720 | > th | dose independent | rect. | 2 | 21 |
| 164 | 18.61 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 180 | 18.62 | temperature | 20.0 | 1440 | < th | dose dependent | sin | 8 | NA |
| 273 | 18.65 | temperature | 20.0 | 720 | < th | dose independent | rect. | 24 | 21 |
| 284 | 18.65 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 23 | 11 |
| 309 | 18.65 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 401 | 18.68 | temperature | 20.0 | 720 | > th | dose independent | rect. | 18 | 22 |
| 463 | 18.70 | temperature | 20.0 | 720 | < th | dose independent | rect. | 20 | 22 |
| 475 | 18.71 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 476 | 18.71 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 486 | 18.71 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 4 |
| 513 | 18.73 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 4 |
| 552 | 18.75 | temperature | 20.0 | 720 | > th | dose independent | rect. | 9 | 23 |
| 566 | 18.76 | temperature | 20.0 | 720 | < th | dose independent | no | NA | NA |
| 572 | 18.76 | temperature | 20.0 | 720 | > th | dose independent | rect. | 11 | 23 |
| 574 | 18.76 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 4 |
| 580 | 18.77 | temperature | 20.0 | 720 | > th | dose independent | rect. | 11 | 21 |
| 586 | 18.77 | temperature | 20.0 | 720 | < th | dose independent | rect. | 11 | 23 |
| 588 | 18.77 | temperature | 20.0 | 720 | < th | dose independent | rect. | 15 | 23 |
| 600 | 18.78 | temperature | 20.0 | 720 | > th | dose independent | no | NA | NA |
| 635 | 18.80 | wind | 9.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 644 | 18.80 | temperature | 20.0 | 720 | < th | dose independent | rect. | 4 | 23 |
| 668 | 18.82 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 676 | 18.82 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 707 | 18.84 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 719 | 18.85 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 12 | 2 |
| 720 | 18.85 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 754 | 18.87 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 2 |
| 759 | 18.88 | wind | 9.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 843 | 18.93 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 21 |
| 882 | 18.97 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 906 | 18.99 | temperature | 20.0 | 720 | < th | dose independent | sin | 2 | NA |
| 908 | 18.99 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 7 | 7 |
| 922 | 18.99 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 935 | 18.99 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 22 |
| 957 | 19.01 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 4 | 20 |
| 967 | 19.02 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 974 | 19.02 | humidity | 90.0 | 4320 | > th | dose dependent | sin | 1 | NA |
| 977 | 19.02 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 19 |
| 983 | 19.03 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 1000 | 19.03 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 21 |