BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0129200 Os06g0129200|AK102435
(433 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0129200 Conserved hypothetical protein 875 0.0
Os07g0668800 Conserved hypothetical protein 271 6e-73
Os03g0769400 Conserved hypothetical protein 81 1e-15
Os04g0579700 Similar to Predicted protein 80 4e-15
Os07g0123500 Thioredoxin-related domain containing protein 75 8e-14
>Os06g0129200 Conserved hypothetical protein
Length = 433
Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/433 (98%), Positives = 427/433 (98%)
Query: 1 MEPSDLVDGYKFGDQTTSDVRVCFKRADDQAEWFCCHSSVLSGNSKYFADWLSRNDIGSN 60
MEPSDLVDGYKFGDQTTSDVRVCFKRADDQAEWFCCHSSVLSGNSKYFADWLSRNDIGSN
Sbjct: 1 MEPSDLVDGYKFGDQTTSDVRVCFKRADDQAEWFCCHSSVLSGNSKYFADWLSRNDIGSN 60
Query: 61 NCIGVDCISADYEHYVKVLKLIYLPAESIIDSFESVRSAVGVLRASTLLKCELITRSCIE 120
NCIGVDCISADYEHYVKVLKLIYLPAESIIDSFESVRSAVGVLRASTLLKCELITRSCIE
Sbjct: 61 NCIGVDCISADYEHYVKVLKLIYLPAESIIDSFESVRSAVGVLRASTLLKCELITRSCIE 120
Query: 121 YLEAASWDXXXXXXILEVAQSLGSEEAVALLARLQAPNVSAVKNVFISAIRFATSMESPS 180
YLEAASWD ILEVAQSLGSEEAVALLARLQAPNVSAVKNVFISAIRFATSMESPS
Sbjct: 121 YLEAASWDEKEEEEILEVAQSLGSEEAVALLARLQAPNVSAVKNVFISAIRFATSMESPS 180
Query: 181 PPFLDDLKTSAQEQIDFMLHEDDDTALVTMDEDVRSVVREGLKKLFSTLKIGLDLLTSEY 240
PPFLDDLKTSAQEQIDFMLHEDDDTALVTMDEDVRSVVREGLKKLFSTLKIGLDLLTSEY
Sbjct: 181 PPFLDDLKTSAQEQIDFMLHEDDDTALVTMDEDVRSVVREGLKKLFSTLKIGLDLLTSEY 240
Query: 241 EQLPEQAEQRVLCSLADIDWMANVLTKIEMMNEFVSGWSEISGYVLSVVQDKKYSSGLWL 300
EQLPEQAEQRVLCSLADIDWMANVLTKIEMMNEFVSGWSEISGYVLSVVQDKKYSSGLWL
Sbjct: 241 EQLPEQAEQRVLCSLADIDWMANVLTKIEMMNEFVSGWSEISGYVLSVVQDKKYSSGLWL 300
Query: 301 VKAKLIEVTGKAFDAVGYGSVVFPASSRVHFLRMWLPFMQTTKRLLDEKSKDDAIPQMDA 360
VKAKLIEVTGKAFDAVGYGSVVFPASSRVHFLRMWLPFMQTTKRLLDEKSKDDAIPQMDA
Sbjct: 301 VKAKLIEVTGKAFDAVGYGSVVFPASSRVHFLRMWLPFMQTTKRLLDEKSKDDAIPQMDA 360
Query: 361 DLFQNIEGAIVSLVLALPSGDQADILGEWMKNAEQFRYPDLTEAFEVWCYRSKTAKRRLV 420
DLFQNIEGAIVSLVLALPSGDQADILGEWMKNAEQFRYPDLTEAFEVWCYRSKTAKRRLV
Sbjct: 361 DLFQNIEGAIVSLVLALPSGDQADILGEWMKNAEQFRYPDLTEAFEVWCYRSKTAKRRLV 420
Query: 421 GGLNGSGNPTVSL 433
GGLNGSGNPTVSL
Sbjct: 421 GGLNGSGNPTVSL 433
>Os07g0668800 Conserved hypothetical protein
Length = 439
Score = 271 bits (693), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 163/429 (37%), Positives = 242/429 (56%), Gaps = 31/429 (7%)
Query: 11 KFGDQTTSDVRVCFKRADDQAEWFCCHSSVLSGNSKYFAD-----WLSRNDIGSNNCIGV 65
K GD TSDV V + + + EW CHS VL+ S+YFAD W + +GS C+ V
Sbjct: 12 KIGDLATSDVVVRLRTPEGRDEWLYCHSGVLAAGSRYFADRLSDDWPTCQILGSRYCVEV 71
Query: 66 DCISADYEHYVKVLKLIYLPAESIIDSFESVRSAVGVLRASTLLKCELITRSCIEYLEAA 125
C D +V L+L+Y A F VR A+GVL+A+ L C + +C++YLE+A
Sbjct: 72 HCQELDLSPHVTALRLLY--AAEPCSRF-GVRGALGVLQAAAHLACPRVAAACVDYLESA 128
Query: 126 SWDXXXXXXILEVAQSLGSEEAVALLARLQAPNVSAVKNVFISAIRFATSMESPSPPFLD 185
WD IL LG + +LARL+ + + V + +SA R ATS SP
Sbjct: 129 PWDEADEEEILRTIPCLGPQYE-CVLARLRPIDPAPVAGILLSAFRHATSTRSPP----Q 183
Query: 186 DLKTSAQEQIDFMLHEDDDTALVTMDED-VRSVVREGLKKLFSTLKIGLDLLTSEYEQLP 244
+LK++AQEQ+++ML EDDD L+ D+D VRS V++ + L S + E + P
Sbjct: 184 ELKSAAQEQLEYMLTEDDDAPLLAFDDDIVRSQVKDCVAALLSRFSGFTSSILMEQGEAP 243
Query: 245 -----EQAEQRVLCSLADIDWMANVLTKIEMMNEFVSGWSEISGYVLSVVQDKKYSSGLW 299
+ +Q + ++DI W+ +L+K+EMM V W +S V+ V K G+
Sbjct: 244 LGHGDAEVQQELHSLVSDISWVCQILSKLEMMKCVVVYWIGVSSDVVEAVD--KACGGIS 301
Query: 300 LVKAKL--IEVTGKAFDAVGYGSVVFPASSRVHFLRMWLPFMQTTKRLLDEKSKDD---- 353
+K +L IEV+ K +A+ +G++V P R + +W+ F + TK L+ DD
Sbjct: 302 CLKTRLKVIEVSAKVLEAIAFGNIVLPTEKRCDAVNVWIGFARRTKPLVGHPEHDDDDGD 361
Query: 354 -AIPQ--MDADLFQNIEGAIVSLVLALPSGDQADILGEWMKNAEQFRYPDLTEAFEVWCY 410
P+ +D++++Q++E AIVS+VL LPS QADIL +W+++ + +YPDLTEAFEVWCY
Sbjct: 362 AEAPKINLDSEVWQSLESAIVSIVLTLPSNSQADILSDWLQS-KHAKYPDLTEAFEVWCY 420
Query: 411 RSKTAKRRL 419
RSK AKRRL
Sbjct: 421 RSKAAKRRL 429
>Os03g0769400 Conserved hypothetical protein
Length = 522
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 102/416 (24%), Positives = 165/416 (39%), Gaps = 45/416 (10%)
Query: 12 FGDQTTSDVRVCFKRADDQAEWFCCHSSVLSGNSKYFADWLSRNDIGSNNCIGVDCISAD 71
FG SD++V D A H ++L+ NS +FAD LSR S+ + DC D
Sbjct: 120 FGQLEMSDLKVVLYGKDGVAVKMSVHRNILAENSTWFADKLSRQSPMSSMEVP-DC--ED 176
Query: 72 YEHYVKVLKLIYLPAESIIDSFESVRSAVGVLRASTLLKCELITRSCIEYLEAASWDXXX 131
E YV+ + L+Y +SV + +L+ + LL + SC+EYLEA W
Sbjct: 177 VEIYVETVGLMYCNDAKQRLIKQSVPRVLRILKVAELLGFQACVLSCLEYLEAVPWVGEE 236
Query: 132 XXXILEVAQSL--GSEEAVALLARLQAPNVSAVKNVFISAIRFATSMESPSPPFLDDLKT 189
++ Q L G+ +L R+ + S + F+ I D +
Sbjct: 237 EENVVSSVQHLQSGNYGVSPILKRVCSDLTSPPNDTFVHIIELVLKSGE------DRGRR 290
Query: 190 SAQEQIDFMLHEDDDTALVTMD---EDVRSVVREGLKKLFSTLKIGL-DLLTSEYEQLPE 245
+ + +L E+ ++D E + S + L+ L + + D + L E
Sbjct: 291 EMKSLVLKLLKENSSCTSTSVDIYAETLYSSCQNCLESLLTLFRQATADDFAEQSLDLKE 350
Query: 246 QAEQRVLCSLADIDWMANVLTKIEMMNEFVSGWSEISGYVLSVVQDKKYSSGLWLVKAKL 305
+++ ++ W+ +L EF WS L+ + K + LV
Sbjct: 351 PVFRQIALEADNLLWLTEILADRNAAGEFAVMWSNQGE--LAELHSKLPTKSRHLVSC-- 406
Query: 306 IEVTGKAFDAVGYGSVVFPASSRVHFLRMWL-PFM------QTTKRLLDEKSKDDAIPQM 358
VT + F A+G G ++ +R L +WL P M Q R D K
Sbjct: 407 --VTARLFVAIGKGDMLPSKDTRKLLLDVWLQPLMDDYNWLQHGCRSFDRKV-------- 456
Query: 359 DADLFQNIEGAIVSLVLALPSGDQADILGEWMKNAEQF--RYPDLTEAFEVWCYRS 412
+E I +L LP DQ IL W+ + + P+L +AFEVW R+
Sbjct: 457 -------VEEGIGRTILTLPLEDQQTILLSWLGSFLKVGDSCPNLQKAFEVWWKRT 505
>Os04g0579700 Similar to Predicted protein
Length = 533
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 111/445 (24%), Positives = 181/445 (40%), Gaps = 78/445 (17%)
Query: 9 GYKFGDQTTSDVRVCFKRADDQAEWFCCHSSVLSGNSKYFA----DWLSRNDIGSNNCIG 64
G +F D +SDVR+ D + C H +L +S++FA D S+ + +
Sbjct: 103 GNQFNDADSSDVRLTLTSKDGLSVTLCVHRHILVAHSRFFAAKLSDRWSKQQRTLPHIVE 162
Query: 65 V-DCISADYEHYVKVLKLIYLPAESIIDSFESVRSAVGVLRASTLLKCELITRSCIEYLE 123
+ DC D E YV+ L+L+Y E V +G+L+ S + + SC+EYLE
Sbjct: 163 ISDC--DDVEVYVETLRLMYCKDLRRRLMREDVSKVLGILKVSAAIVFDAGVLSCLEYLE 220
Query: 124 AASWDXXXXXXILEVAQSLGSEEAVALLARLQAPNVSAVKNVFISAIRFATS-----MES 178
AA W E+ ALL +L N A + + ++ A S +E
Sbjct: 221 AAPWAED------------DDEKVAALLTQLHLENSGAGEVLKRVSLELAPSAVAEEVEV 268
Query: 179 PSPPFLDDLKTSAQEQIDFMLHE----DDDTALVTMDEDVRSVVREG-----------LK 223
S +E + +L D+ A M V ++RE L+
Sbjct: 269 GSGCNGGGNSGGGEEVLVRLLQVVLEGKDEKARREMKGLVSKMLRENSTSRGGAIGGDLR 328
Query: 224 K--LFSTLKIGLDLLTSEYEQLP--EQAEQRVLCSLAD-IDWMANVLTKIEMMNEFVSGW 278
K L+S L LL ++E +Q+E + AD + WM ++L + ++ +F+ W
Sbjct: 329 KESLYSACNGCLRLLHEQFEMAAGGDQSEVAQIARQADNLHWMLDILVERQIAEDFLRTW 388
Query: 279 ------SEISGYVLSVVQDKKYSSGLWLVKAKLIEVTGKAFDAVGYGSVVFPASSRVHFL 332
+E+ G V ++ +Y ++ VT + F VG G ++ R L
Sbjct: 389 AMQIELAELHGKVPAI---HRY---------EVSRVTARLFVGVGKGQILVSKEVRCQLL 436
Query: 333 RMWL-PFMQTTKRLLDEKSKDDAIPQMDADLFQNIEGAIVSLVLALPSGDQADILGEW-- 389
WL PF + D A +D L IE + + +L LP Q +IL W
Sbjct: 437 STWLEPFYE------DFGWMRRACKGLDRHL---IEDGLANTILTLPLATQQEILLAWFN 487
Query: 390 --MKNAEQFRYPDLTEAFEVWCYRS 412
+ + E P++ FEVW R+
Sbjct: 488 RFLNSGEDC--PNIQRGFEVWWRRA 510
>Os07g0123500 Thioredoxin-related domain containing protein
Length = 527
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 111/439 (25%), Positives = 175/439 (39%), Gaps = 91/439 (20%)
Query: 12 FGDQTTSDVRVCFKRADDQAEWFCCHSSVLSGNSKYFADWLSRNDIGSNNCIGV-DCISA 70
FG TSD++V + A H ++L+ NS +FAD LSR S CI V DC
Sbjct: 123 FGQLHTSDLKVMLYGREGVAVKMIVHKNILAENSTFFADKLSRQSPVS--CIEVSDC--E 178
Query: 71 DYEHYVKVLKLIYLP--AESIIDSFESVRSAVGVLRASTLLKCELITRSCIEYLEAASWD 128
D E +V+ + L+Y + +I ++V + +L+ + L SC+ YLEA W
Sbjct: 179 DVEIFVETVGLMYCKDVKQRLIK--QAVARVLRILKVAESLGFPTCIMSCLNYLEAVPW- 235
Query: 129 XXXXXXILEVAQSLGSEEAVALLARLQAPNVSAVKNVFISAI--RFATSMESPSPPFLDD 186
+G EE L + Q +N +S + R A+ + +P L
Sbjct: 236 -------------VGDEEENVLSSIRQL----HCENYGVSPLLKRVASDLTNPPSDTLAH 278
Query: 187 LKTSAQEQIDFMLHEDDDTALVTMDEDVRSVVREG-----------LKKLFSTLKIGLDL 235
+ I+ +L DD M V +++E + +S+ + L+
Sbjct: 279 I-------IELVLKSSDDRGRREMKSLVLKLLKENNIWTNGSSDSCVVTFYSSCRNCLES 331
Query: 236 LTSEYEQL--PEQAEQ----------RVLCSLADIDWMANVLTKIEMMNEFVSGWSEISG 283
L++ + Q PE +EQ ++ ++ W+A +L +E S W+
Sbjct: 332 LSNLFRQASEPEFSEQSSDSKEVIFRQITLEADNLLWLAEILADRNAADELTSIWA---- 387
Query: 284 YVLSVVQDKKYSSGLWLVKAKLIE-VTGKAFDAVGYGSVVFPASSRVHFLRMWL-PFM-- 339
S + K + ++ LI VT + F AVG G + +R L +WL P M
Sbjct: 388 ---SQGELAKLHCRIPVMHRHLISCVTARLFVAVGKGEALPSKETRQLLLDVWLQPLMDD 444
Query: 340 ----QTTKRLLDEKSKDDAIPQMDADLFQNIEGAIVSLVLALPSGDQADILGEWMKNAEQ 395
Q R D K IE I +L LP DQ IL W+ +
Sbjct: 445 YNWLQHGCRWFDRKV---------------IEEGIGQTILTLPLEDQQSILLTWLGRFLK 489
Query: 396 F--RYPDLTEAFEVWCYRS 412
P+L AFEVW R+
Sbjct: 490 VGDSCPNLQRAFEVWWRRT 508
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.133 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,805,790
Number of extensions: 532577
Number of successful extensions: 1277
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1264
Number of HSP's successfully gapped: 5
Length of query: 433
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 329
Effective length of database: 11,605,545
Effective search space: 3818224305
Effective search space used: 3818224305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)