BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0104000 Os06g0104000|AK068490
(718 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0104000 Conserved hypothetical protein 1303 0.0
Os01g0929000 Conserved hypothetical protein 105 2e-22
Os12g0479900 Conserved hypothetical protein 92 2e-18
Os11g0528400 Conserved hypothetical protein 88 2e-17
>Os06g0104000 Conserved hypothetical protein
Length = 718
Score = 1303 bits (3373), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/718 (90%), Positives = 649/718 (90%)
Query: 1 MPLLLLRAGAGAKXXXXXXXXXXXGDVRISSRPPTTATRCXXXXXXXXXXATVQFRSDSD 60
MPLLLLRAGAGAK GDVRISSRPPTTATRC ATVQFRSDSD
Sbjct: 1 MPLLLLRAGAGAKPPLSFSVPPPPGDVRISSRPPTTATRCSSSSSPKLSSATVQFRSDSD 60
Query: 61 PWNQPTVDDDGDFDLKGRKAIPGIHVPRQRYIAVSKPALLDALLSLFPSQXXXXXXXXXX 120
PWNQPTVDDDGDFDLKGRKAIPGIHVPRQRYIAVSKPALLDALLSLFPSQ
Sbjct: 61 PWNQPTVDDDGDFDLKGRKAIPGIHVPRQRYIAVSKPALLDALLSLFPSQPPTPSPTSAA 120
Query: 121 XXDFKRFARCLDALLHAEHKEMLEEMRTYYMLTHNHHQHTXXXXXXXXXQSVLNGNANTT 180
DFKRFARCLDALLHAEHKEMLEEMRTYYMLTHNHHQHT QSVLNGNANTT
Sbjct: 121 AADFKRFARCLDALLHAEHKEMLEEMRTYYMLTHNHHQHTAAADDDDDDQSVLNGNANTT 180
Query: 181 AGFFGITDNXXXXXXXXXXXXXXXXXXPDPDSHNRIAFATHFQRSFMNLLRNAQFEELSA 240
AGFFGITDN PDPDSHNRIAFATHFQRSFMNLLRNAQFEELSA
Sbjct: 181 AGFFGITDNGTLLLTRSLGLRTLLGLSPDPDSHNRIAFATHFQRSFMNLLRNAQFEELSA 240
Query: 241 QDLLLTYALNTDYLLTLPIYVDWKKAAESNAIIFRRGYATERQKGLLLVEKLDYLQSKLL 300
QDLLLTYALNTDYLLTLPIYVDWKKAAESNAIIFRRGYATERQKGLLLVEKLDYLQSKLL
Sbjct: 241 QDLLLTYALNTDYLLTLPIYVDWKKAAESNAIIFRRGYATERQKGLLLVEKLDYLQSKLL 300
Query: 301 QNIFFGFSKPLRKLGKWLNEALKRSTGNEGFQIWIEKLKVWLKEQTYAENSLSLIENSSW 360
QNIFFGFSKPLRKLGKWLNEALKRSTGNEGFQIWIEKLKVWLKEQTYAENSLSLIENSSW
Sbjct: 301 QNIFFGFSKPLRKLGKWLNEALKRSTGNEGFQIWIEKLKVWLKEQTYAENSLSLIENSSW 360
Query: 361 DKLRSDQLPDADLPIWIAAQRAVSRYEGILSPVGPXXXXXXXXXAWTGLIPSLPEATIKS 420
DKLRSDQLPDADLPIWIAAQRAVSRYEGILSPVGP AWTGLIPSLPEATIKS
Sbjct: 361 DKLRSDQLPDADLPIWIAAQRAVSRYEGILSPVGPRGRLLRRLLAWTGLIPSLPEATIKS 420
Query: 421 DIDTKDLEGYVRPNFLPRITLANIWAPASRESCNNNLWEITKASFGVLFGKSTLQEPAFQ 480
DIDTKDLEGYVRPNFLPRITLANIWAPASRESCNNNLWEITKASFGVLFGKSTLQEPAFQ
Sbjct: 421 DIDTKDLEGYVRPNFLPRITLANIWAPASRESCNNNLWEITKASFGVLFGKSTLQEPAFQ 480
Query: 481 ELILLYTDEADQSKEREKSDMMPLQLKIFERIPIPDLPVVFPHKKLSFRILDTVRLDIAT 540
ELILLYTDEADQSKEREKSDMMPLQLKIFERIPIPDLPVVFPHKKLSFRILDTVRLDIAT
Sbjct: 481 ELILLYTDEADQSKEREKSDMMPLQLKIFERIPIPDLPVVFPHKKLSFRILDTVRLDIAT 540
Query: 541 VIGLLAYVVNYKFESLASSPSAFLLDIVAFTALAILVFRVALGYKQTRDRYQLLVNKTLY 600
VIGLLAYVVNYKFESLASSPSAFLLDIVAFTALAILVFRVALGYKQTRDRYQLLVNKTLY
Sbjct: 541 VIGLLAYVVNYKFESLASSPSAFLLDIVAFTALAILVFRVALGYKQTRDRYQLLVNKTLY 600
Query: 601 EKTLASGFGSVYFLLDASEQQQYKEALLAYGMLLCRKKYQVSSRVSIRDTCEQFMYEKFK 660
EKTLASGFGSVYFLLDASEQQQYKEALLAYGMLLCRKKYQVSSRVSIRDTCEQFMYEKFK
Sbjct: 601 EKTLASGFGSVYFLLDASEQQQYKEALLAYGMLLCRKKYQVSSRVSIRDTCEQFMYEKFK 660
Query: 661 AKIEMPIDKAMETLLRLGLVIELPTDGGSRVIALPCSDAYEILKSRWDSLLEHKTEQG 718
AKIEMPIDKAMETLLRLGLVIELPTDGGSRVIALPCSDAYEILKSRWDSLLEHKTEQG
Sbjct: 661 AKIEMPIDKAMETLLRLGLVIELPTDGGSRVIALPCSDAYEILKSRWDSLLEHKTEQG 718
>Os01g0929000 Conserved hypothetical protein
Length = 488
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 131/257 (50%), Gaps = 23/257 (8%)
Query: 459 EITKASFGVLFGKSTLQEPAFQELILLYTDEADQSKEREKSDMMPLQLKIFERIPIPDLP 518
E S L GK T+QEP F+E+I+LY ++ + + + +K F+ IP+ D+
Sbjct: 245 ETMNLSLRNLIGKVTIQEPTFEEVIVLYRRKSPKGQNDR-----SIHVKHFKNIPMADME 299
Query: 519 VVFPHKKL-SFRILDTVRLDIATVIGLLAYVVNYKFESLASSPSAFLLDIVAFTALAILV 577
+V P KK S +D V+ ++ VIGL+ V SL + F + + +ALA
Sbjct: 300 LVLPEKKNPSLTPMDWVQFIVSVVIGLVTLV-----SSLEMPKADFWVVVAVLSALAGYC 354
Query: 578 FRVALGYKQTRDRYQLLVNKTLYEKTLASGFGSVYFLLDASEQQQYKEALLAYGMLLCRK 637
++ L ++Q YQ L+ +++Y+K L SG G++ L D QQ+ KE +++Y +L+
Sbjct: 355 AKIYLSFQQNMATYQNLITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEIIISYYILM--- 411
Query: 638 KYQVSSRVSIRD---TCEQFMYEKFKAKIEMPIDKAMETLLRLGLVIELPTDGGSRVIAL 694
+ + +I D CE+ + E+F + + A++ L RLG++ D R+ L
Sbjct: 412 ---ENGKATIEDLDLQCEELIQEEFGLQCNFEVMDAVQKLERLGII---TRDSIGRICCL 465
Query: 695 PCSDAYEILKSRWDSLL 711
A EI+ + + L+
Sbjct: 466 SLKRANEIIGATTEELV 482
>Os12g0479900 Conserved hypothetical protein
Length = 510
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 123/245 (50%), Gaps = 17/245 (6%)
Query: 468 LFGKSTLQEPAFQELILLYTDEADQSKEREKSDMMPLQLKIFERIPIPDLPVVFPHKKL- 526
L K T+QEP F +I++Y ++K + +K F+ IP+ D+ +V P KK
Sbjct: 272 LMSKMTIQEPTFDRMIVVYRRAGTKTKPDR-----GIFVKHFKNIPMADMEIVLPEKKNP 326
Query: 527 SFRILDTVRLDIATVIGLLAYVVNYKFESLASSPSAFLLDIVAFTALAILVFRVALGYKQ 586
+ +D V+ I+ VIGL+ F SL + + I + + ++ ++Q
Sbjct: 327 TLTPMDWVKFLISAVIGLVTL-----FGSLEMPKADIWVVIAILSGVIGYCAKIYFTFQQ 381
Query: 587 TRDRYQLLVNKTLYEKTLASGFGSVYFLLDASEQQQYKEALLAYGMLLCRKKYQVSSRVS 646
YQ L+ K++Y+K L SG G++ L D QQ+ KE +++Y +L+ + K ++
Sbjct: 382 NMTIYQNLITKSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISYYILMEQGK---ATEQD 438
Query: 647 IRDTCEQFMYEKFKAKIEMPIDKAMETLLRLGLVIELPTDGGSRVIALPCSDAYEILKSR 706
+ CE+ + E+F A+ + A++ L RLG+V D R++ + A EIL +
Sbjct: 439 LDLRCEELIKEEFGAECNFDVRDAVKKLERLGIV---HRDSIGRIVCVSLKRANEILGNT 495
Query: 707 WDSLL 711
+ L+
Sbjct: 496 TEELV 500
>Os11g0528400 Conserved hypothetical protein
Length = 503
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 124/246 (50%), Gaps = 17/246 (6%)
Query: 459 EITKASFGVLFGKSTLQEPAFQELILLYTDEADQSKEREKSDMMPLQLKIFERIPIPDLP 518
E + S L + T+QEP F+ +I++Y + ++K + +K F+ IP+ D+
Sbjct: 256 EKMELSIKNLLSQMTIQEPTFERMIVVYRKSSTEAKPDR-----GIFVKHFKNIPMADME 310
Query: 519 VVFPHKKL-SFRILDTVRLDIATVIGLLAYVVNYKFESLASSPSAFLLDIVAFTALAILV 577
+V P KK S +D V+ I+ V+GL+ + SL + + I + L
Sbjct: 311 LVLPEKKNPSLTPMDWVKFLISAVLGLVTLI-----GSLEMPKADIWVVIAILSGLIGYC 365
Query: 578 FRVALGYKQTRDRYQLLVNKTLYEKTLASGFGSVYFLLDASEQQQYKEALLAYGMLLCRK 637
++ ++ YQ L+ K++Y+K L SG G++ L D QQ+ KE +++Y +L+ +
Sbjct: 366 AKIYFTFQANMVSYQNLITKSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIVSYYILMEQG 425
Query: 638 KYQVSSRVSIRDTCEQFMYEKFKAKIEMPIDKAMETLLRLGLVIELPTDGGSRVIALPCS 697
K V + +R CEQ + E+F + + A++ L +LG+V D R++ +P
Sbjct: 426 KATVQD-LDLR--CEQLIKEEFGVECNFDVVDAVKKLEKLGIV---SRDSIGRIVCVPLK 479
Query: 698 DAYEIL 703
A +I+
Sbjct: 480 RANDII 485
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,861,842
Number of extensions: 778454
Number of successful extensions: 1474
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1464
Number of HSP's successfully gapped: 4
Length of query: 718
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 610
Effective length of database: 11,396,689
Effective search space: 6951980290
Effective search space used: 6951980290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)