BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0586600 Os05g0586600|AB096011
(500 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0586600 Plastid sigma factor SIG5 799 0.0
Os03g0271100 Similar to Sigma factor SIG2B 134 2e-31
Os08g0242800 Similar to Sigma factor SIG6 129 4e-30
Os11g0448400 Similar to Sigma factor SIG2A 115 1e-25
Os08g0163400 Sigma-70 factor family protein 102 5e-22
Os05g0589200 Sigma-70 region 2 domain containing protein 79 5e-15
>Os05g0586600 Plastid sigma factor SIG5
Length = 500
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/500 (80%), Positives = 404/500 (80%)
Query: 1 MASTVTTPSRPVSAGCHRRSPRRSAPVVXXXXXXXXXXXXXXXXCSALASPAKQGTAKLP 60
MASTVTTPSRPVSAGCHRRSPRRSAPVV CSALASPAKQGTAKLP
Sbjct: 1 MASTVTTPSRPVSAGCHRRSPRRSAPVVLSLGGGPRRRTPSSTSCSALASPAKQGTAKLP 60
Query: 61 PPQPTASXXXXXXXXXXXXXXXYNEVAAALESIYKLSPXXXXXXXXXXXXXXSKQTXXXX 120
PPQPTAS YNEVAAALESIYKLSP SKQT
Sbjct: 61 PPQPTASRTAAADAERERERTDYNEVAAALESIYKLSPAVVEEKDADEEDEKSKQTKRKR 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXGQRMDLXXXXXXXXXXXXXXXXXXXXXXXXXRGFEEML 180
GQRMDL RGFEEML
Sbjct: 121 KGRVGRSRNATVTVRSSRRRRRGQRMDLGKRVEMRRREEEEGGGGAGKVEDEERGFEEML 180
Query: 181 LREHAVSTDMGSLDWKRMKIPPVLTSAQSIRLFRIMQPMKAIMEMKENLENEVQSEPNDA 240
LREHAVSTDMGSLDWKRMKIPPVLTSAQSIRLFRIMQPMKAIMEMKENLENEVQSEPNDA
Sbjct: 181 LREHAVSTDMGSLDWKRMKIPPVLTSAQSIRLFRIMQPMKAIMEMKENLENEVQSEPNDA 240
Query: 241 QLAEAMNMSVLQMRRHLEVGRAARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGA 300
QLAEAMNMSVLQMRRHLEVGRAARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGA
Sbjct: 241 QLAEAMNMSVLQMRRHLEVGRAARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGA 300
Query: 301 NGLITAIDRFEPKRGFRISTYALFWIRHSIVRAITLSNFTRFPFAMESERQEIHRAREEL 360
NGLITAIDRFEPKRGFRISTYALFWIRHSIVRAITLSNFTRFPFAMESERQEIHRAREEL
Sbjct: 301 NGLITAIDRFEPKRGFRISTYALFWIRHSIVRAITLSNFTRFPFAMESERQEIHRAREEL 360
Query: 361 AFELGRAPTEEEVMKKVGLSPARYRDVVRMTRPTYSLHARNRVTQEELINEVTDDDAIGV 420
AFELGRAPTEEEVMKKVGLSPARYRDVVRMTRPTYSLHARNRVTQEELINEVTDDDAIGV
Sbjct: 361 AFELGRAPTEEEVMKKVGLSPARYRDVVRMTRPTYSLHARNRVTQEELINEVTDDDAIGV 420
Query: 421 DTSSHNTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYE 480
DTSSHNTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYE
Sbjct: 421 DTSSHNTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYE 480
Query: 481 LKALMKLKHPTRVEYLRRYM 500
LKALMKLKHPTRVEYLRRYM
Sbjct: 481 LKALMKLKHPTRVEYLRRYM 500
>Os03g0271100 Similar to Sigma factor SIG2B
Length = 540
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 156/302 (51%), Gaps = 10/302 (3%)
Query: 203 VLTSAQSIRLFRIMQPMKAIMEMKENLENEVQSEPNDAQLAEAMNMSVLQMRRHLEVGRA 262
+LT+ Q + + +Q + + +++ L + EP +Q AEA +R+ L G +
Sbjct: 239 LLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNYGIS 298
Query: 263 ARNKLIKHNLRLVLYTINKY-YPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTY 321
+N ++K N+RLV+ ++ P M F D+ Q G GL+ ++F+ +GFR STY
Sbjct: 299 CKNTMVKSNVRLVISIAREFEGPGME----FSDLIQEGIQGLVRGAEKFDASKGFRFSTY 354
Query: 322 ALFWIRHSIVRAI-TLSNFTRFPFAMESERQEIHRAREELAFELGRAPTEEEVMKKVGLS 380
+ +WI+ +I +++ + R P M + R L +L R PT EE+ G+
Sbjct: 355 SHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGM- 413
Query: 381 PARYRDVVRMTRPTYSLHARNRVTQEELI-NEVTDDDAI-GVDTSSHNTLLRLAIDDLLD 438
P R R M+ P Y++ ++V ++ E+T D + + H L++ +D LD
Sbjct: 414 PLR-RVEAAMSLPKYTVSLTSKVGCTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALD 472
Query: 439 SLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVEYLRR 498
L P+E VIR RFG+D RTL +I + +SRE +R+ EL A KL+ +V+ L+
Sbjct: 473 GLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQH 532
Query: 499 YM 500
Y+
Sbjct: 533 YL 534
>Os08g0242800 Similar to Sigma factor SIG6
Length = 572
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 145/299 (48%), Gaps = 6/299 (2%)
Query: 204 LTSAQSIRLFRIMQPMKAIMEMKENLENEVQSEPNDAQLAEAMNMSVLQMRRHLEVGRAA 263
LT+ + LF +Q + I E LE + EP A+ AEA+ MS +++ + GR
Sbjct: 274 LTAKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRC 333
Query: 264 RNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYAL 323
R K+ + N RLV++ KY + D+ Q G +GL+ ++F P +G R TYA
Sbjct: 334 REKMARSNFRLVIHVARKYEGYGLD---IQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAY 390
Query: 324 FWIRHSIVRAI-TLSNFTRFPFAMESERQEIHRAREELAFELGRAPTEEEVMKKVGLSPA 382
+WIR SI ++I S R P ++ + +++ +AR E E G PT V ++ G++
Sbjct: 391 WWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIME-GEQPTNANVARRAGITIE 449
Query: 383 RYRDVVRMTRPTYSLHARNRVTQEELINEVTDDDAIG-VDTSSHNTLLRLAIDDLLDSLK 441
+ + TR S+ + E+T+D + D S ++R + D L L
Sbjct: 450 KLAKLRAKTRKPRSMQDHVWSDEGVTFQEITEDPNVEPPDLSVDRMMMRQQVRDFLGILS 509
Query: 442 PKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVEYLRRYM 500
P+E +I RFG+ +TL I +S+E +R+ + +AL KLK ++ Y
Sbjct: 510 PREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEKLKRSASLQGFDVYF 568
>Os11g0448400 Similar to Sigma factor SIG2A
Length = 564
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 152/315 (48%), Gaps = 12/315 (3%)
Query: 190 MGSLDWKRMKIPPVLTSAQSIRLFRIMQPMKAIMEMKENLENEVQSEPNDAQLAEAMNMS 249
+GSL WK M +LT+ + + +Q + + ++ L +P AQ A A +
Sbjct: 252 LGSL-WK-MTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVD 309
Query: 250 VLQMRRHLEVGRAARNKLIKHNLRLVLYTINKYY-PDMSNDERFDDICQAGANGLITAID 308
+R+ L+ G +N+++ N+RLV+ ++ P M D+ Q G GLI +
Sbjct: 310 ERTLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGME----LYDLIQEGMQGLIRGAE 365
Query: 309 RFEPKRGFRISTYALFWIRHSIVRAIT-LSNFTRFPFAMESERQEIHRAREELAFELGRA 367
+F+ +GFR STY+ +WI+ ++ ++++ S R P M + + L +L R
Sbjct: 366 KFDASKGFRFSTYSHWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRR 425
Query: 368 PTEEEVMKKVGLSPARYRDVVRMTRPTYSLHARNRVTQEELI-NEVTDDDAIGVDTSSHN 426
PT EE+ G+ R V + P YS+ +++ ++ EVT D N
Sbjct: 426 PTNEEIAADTGMPIKRVEAAVNL--PKYSVSLDSKIGSTDMTYQEVTADPTAETAEEMLN 483
Query: 427 TL-LRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALM 485
L ++ + LD+L +E V+ RFGL+ RTL EI + +SRE +R+ E A
Sbjct: 484 RLSMKRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFR 543
Query: 486 KLKHPTRVEYLRRYM 500
KL+ RV L+ Y+
Sbjct: 544 KLRSKKRVNALKDYL 558
>Os08g0163400 Sigma-70 factor family protein
Length = 520
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 147/300 (49%), Gaps = 17/300 (5%)
Query: 203 VLTSAQSIRLFRIMQPMKAIMEMKENLENEVQSEPNDAQLAEAMNMSVLQMRRHLEVGRA 262
+LT Q + L ++ + + + L+ ++ +EP+ QLA ++ +S ++R +
Sbjct: 217 LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFL 276
Query: 263 ARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYA 322
AR L NLRLV+ +I + Y ++ + D+ Q G GL+ I++F+ RGFRISTY
Sbjct: 277 AREMLTMSNLRLVI-SIAQKYDNLGVE--LADLIQGGLIGLLRGIEKFDASRGFRISTYV 333
Query: 323 LFWIRHSIVRAITLSNFT-RFPFAMESERQEIHRAREELAFELGRAPTEEEVMKKVGLSP 381
+WIR + RA+ ++ T R P + I A+ EL + G APT E + + +S
Sbjct: 334 YWWIRQGVSRALAENSKTFRLPTYLHERLIAIRGAKYELE-DQGIAPTIENIAGSLNISE 392
Query: 382 ARYRDVVRMTRPTYSLHAR-----NRVTQEELINEVTDDDAIGVDTSSHN---TLLRLAI 433
+ + SL + N + E L + + D + + H L+ +
Sbjct: 393 KKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNV--ANDPWHGFEEWYLKEEV 450
Query: 434 DDLLDS-LKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTR 492
+ LL+S L +E +IR G+ G+ T +I+ +SRE VR+ L A+ KLKH R
Sbjct: 451 NKLLNSTLNERERDIIRLYHGI-GKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAAR 509
>Os05g0589200 Sigma-70 region 2 domain containing protein
Length = 464
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 5/183 (2%)
Query: 224 EMKENLENEVQSEPNDAQLAEAMNMSVLQMRRHLEVGRAARNKLIKHNLRLVLYTINKYY 283
+++ENL + SE + A A+A + +R L+ G R +L+ LV Y I K Y
Sbjct: 281 KIRENLLKD-GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLVKY-IAKTY 338
Query: 284 PDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAITL-SNFTRF 342
M F+D+ QAG G++ ++F+ ++G + STY +WIR +++ + S +
Sbjct: 339 AGMGTA--FEDLLQAGKMGVLNGAEKFDSQKGCKFSTYVKYWIRKAMLALLAENSGVIQL 396
Query: 343 PFAMESERQEIHRAREELAFELGRAPTEEEVMKKVGLSPARYRDVVRMTRPTYSLHARNR 402
P ME +++ AR + + GR P + E+ +G+S A R + +R SL+
Sbjct: 397 PARMEGIIRKVREARRAIRYNTGRNPPDAEIAALIGVSVANVRLARKCSRRVVSLYTEIG 456
Query: 403 VTQ 405
V Q
Sbjct: 457 VGQ 459
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,952,529
Number of extensions: 471878
Number of successful extensions: 1308
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1296
Number of HSP's successfully gapped: 6
Length of query: 500
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 395
Effective length of database: 11,553,331
Effective search space: 4563565745
Effective search space used: 4563565745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)