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Os05g0586600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plastid sigma factor SIG5.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0496) R2 : 0.897
β1 : -- (--) R2dD : -- R2D : --
β2 : 8.54 (0.14) R2dC : 0.992 R2C : 0.563
β3 : -5.29 (0.152) R2dE : 0.322 R2E : -0.0926
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.364 (0.105) R2dN8 : 0.00377 R2N8 : 0.0045
σ : 0.928
deviance : 396.77
__
_____
C
peak time of C : 5.86
E
wheather : temperature
threshold : 4.101
memory length : 287
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.6
open length of G : 16.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
392.42 0.931 11.9 0.417 8.38 -4.97 1.11 -0.809 -0.27 6.05 8.476 258 16 16.2
390.48 0.92 11.9 0.561 8.5 -5.14 0.962 -- -0.248 5.94 6.523 276 15.8 16.2
393.2 0.924 11.9 0.5 8.44 -4.99 -- -0.332 -0.266 6.02 7.735 270 15.9 16.2
390.68 0.921 11.9 0.485 8.52 -5.33 -- -- -0.294 5.87 4.852 285 15.7 16.3
2347.43 2.26 12.1 2.34 -- -6.8 -- -0.56 0.472 -- 24.4 456 13.4 19.7
697.51 1.24 12 -0.0521 7.58 -- 2 -- -0.808 7.66 -- -- -- --
708.85 1.25 12 -0.00305 7.58 -- -- -- -0.811 7.65 -- -- -- --
849.99 1.36 11.7 0.343 -- -9.91 -- -- -0.709 -- 13.02 590 10.2 9.93
396.77 0.928 11.9 -- 8.54 -5.29 -- -- -0.364 5.86 4.101 287 15.6 16.3
3800.44 2.88 12.2 0.1 -- -- -- -- -0.699 -- -- -- -- --
708.85 1.25 12 -- 7.58 -- -- -- -0.811 7.65 -- -- -- --
474.9 1.01 12.1 -- -- -8.82 -- -- -0.522 -- -7.949 451 11.7 8.61
3800.7 2.88 12.2 -- -- -- -- -- -0.71 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 395.29 temperature 10.0 270 > th dose dependent rect. 16 16
3 409.82 temperature 20.0 270 > th dose independent rect. 14 8
12 429.33 temperature 20.0 90 > th dose independent rect. 16 18
13 429.43 temperature 30.0 270 < th dose dependent rect. 20 7
43 451.92 temperature 10.0 270 > th dose dependent rect. 14 8
61 457.53 atmosphere 1015.0 270 < th dose independent rect. 15 17
70 460.48 temperature 15.0 10 > th dose dependent rect. 16 18
71 460.98 radiation 1.0 270 > th dose independent rect. 8 7
78 463.92 atmosphere 1015.0 270 < th dose independent rect. 14 7
86 467.96 radiation 40.0 270 < th dose independent rect. 15 17
87 468.28 precipitation 0.1 270 < th dose independent rect. 8 7
88 468.28 precipitation 0.1 270 < th dose dependent rect. 8 7
99 469.52 temperature 10.0 270 > th dose independent rect. 8 7
100 469.52 atmosphere 1015.0 270 < th dose independent rect. 8 7
101 469.52 temperature 10.0 270 > th dose independent rect. 15 17
107 470.68 wind 9.0 270 < th dose independent rect. 15 17
111 471.37 temperature 15.0 10 > th dose dependent rect. 18 16
112 471.77 wind 1.0 270 > th dose independent rect. 14 7
115 472.26 temperature 30.0 270 < th dose dependent rect. 9 18
130 474.30 atmosphere 995.0 270 > th dose independent rect. 8 7
132 474.38 wind 9.0 270 < th dose independent rect. 8 7
133 474.81 temperature 10.0 270 > th dose independent rect. 14 7
134 474.81 temperature 10.0 270 > th dose independent rect. 21 17
135 474.81 atmosphere 995.0 270 > th dose independent rect. 21 17
144 475.49 temperature 20.0 10 > th dose independent rect. 16 8
145 475.69 wind 9.0 270 < th dose independent rect. 3 17
148 475.91 radiation 40.0 270 < th dose independent rect. 14 7
149 476.06 wind 9.0 270 < th dose independent rect. 14 7
151 476.37 precipitation 0.1 270 < th dose independent rect. 21 17
152 476.37 precipitation 0.1 270 < th dose dependent rect. 21 17
168 477.95 wind 9.0 270 < th dose independent rect. 20 7
169 477.97 temperature 10.0 270 > th dose independent rect. 20 7
170 477.97 temperature 30.0 270 < th dose independent rect. 20 7
171 477.97 humidity 50.0 270 > th dose independent rect. 20 7
174 477.97 atmosphere 995.0 270 > th dose independent rect. 20 7
175 477.97 radiation 1.0 270 < th dose independent rect. 20 7
180 477.97 temperature 10.0 270 > th dose independent rect. 3 17
181 477.97 atmosphere 1015.0 270 < th dose independent rect. 3 17
182 477.97 radiation 10.0 270 < th dose dependent rect. 20 7
195 479.45 wind 9.0 270 < th dose independent rect. 21 17
203 480.61 precipitation 0.1 270 < th dose independent rect. 15 17
205 480.61 precipitation 0.1 270 < th dose dependent rect. 15 17
211 481.29 temperature 15.0 270 > th dose independent rect. 1 9
222 482.05 humidity 50.0 270 > th dose independent rect. 1 9
223 482.19 wind 9.0 270 < th dose independent rect. 4 15
227 482.49 humidity 60.0 270 > th dose independent rect. 2 7
228 482.67 wind 9.0 270 < th dose independent rect. 1 9
233 482.94 atmosphere 995.0 270 > th dose independent rect. 1 9
234 482.94 atmosphere 1015.0 270 < th dose independent rect. 1 9
235 482.94 temperature 10.0 270 > th dose independent rect. 10 15
244 483.85 temperature 10.0 270 > th dose independent rect. 19 9
245 483.85 temperature 30.0 270 < th dose independent rect. 19 9
246 483.85 humidity 50.0 270 > th dose independent rect. 19 9
247 483.85 atmosphere 995.0 270 > th dose independent rect. 19 9
248 483.85 radiation 1.0 270 < th dose independent rect. 19 9
253 483.85 temperature 10.0 270 > th dose independent rect. 4 15
254 483.85 atmosphere 1015.0 270 < th dose independent rect. 4 15
255 483.86 radiation 10.0 270 < th dose dependent rect. 19 9
260 483.92 wind 9.0 270 < th dose independent rect. 19 9
262 483.94 temperature 10.0 270 > th dose dependent rect. 2 7
263 484.10 wind 9.0 270 < th dose independent rect. 2 7
264 484.10 temperature 10.0 270 > th dose independent rect. 2 7
267 484.10 atmosphere 995.0 270 > th dose independent rect. 2 7
268 484.10 atmosphere 1015.0 270 < th dose independent rect. 2 7
269 484.10 temperature 10.0 270 > th dose independent rect. 9 17
272 484.53 precipitation 0.1 270 < th dose independent rect. 14 7
273 484.53 precipitation 0.1 270 < th dose dependent rect. 14 7
276 484.84 precipitation 0.1 270 < th dose independent rect. 20 7
277 484.84 precipitation 0.1 270 < th dose dependent rect. 20 7
296 485.13 radiation 40.0 270 < th dose independent rect. 2 7
302 485.55 atmosphere 995.0 270 > th dose independent rect. 15 17
303 485.61 precipitation 0.1 270 < th dose independent rect. 9 17
304 485.61 precipitation 0.1 270 < th dose dependent rect. 9 17
307 486.07 precipitation 0.1 270 < th dose independent rect. 10 15
308 486.07 precipitation 0.1 270 < th dose dependent rect. 10 15
315 486.83 radiation 20.0 10 < th dose dependent rect. 7 16
316 486.88 radiation 10.0 10 < th dose dependent sin 20 NA
324 487.43 precipitation 0.1 270 < th dose independent rect. 2 7
325 487.43 precipitation 0.1 270 < th dose dependent rect. 2 7
335 487.87 precipitation 0.1 270 < th dose independent rect. 19 9
336 487.87 precipitation 0.1 270 < th dose dependent rect. 19 9
345 488.61 precipitation 0.1 270 < th dose independent rect. 1 9
346 488.61 precipitation 0.1 270 < th dose dependent rect. 1 9
361 489.88 wind 9.0 270 < th dose independent rect. 9 17
363 489.99 radiation 20.0 10 < th dose dependent rect. 12 11
374 490.69 temperature 30.0 270 < th dose independent rect. 2 7
403 491.48 wind 9.0 270 < th dose independent rect. 10 15
406 491.54 wind 1.0 270 > th dose independent rect. 8 7
426 492.20 precipitation 0.1 270 < th dose independent rect. 3 17
427 492.20 precipitation 0.1 270 < th dose dependent rect. 3 17
438 492.64 atmosphere 995.0 270 > th dose independent rect. 14 7
449 493.40 radiation 10.0 10 < th dose independent rect. 13 10
454 493.59 precipitation 0.1 270 < th dose independent rect. 4 15
455 493.59 precipitation 0.1 270 < th dose dependent rect. 4 15
476 494.79 radiation 40.0 90 < th dose dependent rect. 15 8
489 495.39 atmosphere 995.0 270 > th dose independent rect. 3 17
521 496.41 humidity 50.0 270 > th dose independent rect. 15 17
554 497.40 atmosphere 1015.0 10 < th dose independent rect. 16 18
565 497.68 temperature 10.0 10 > th dose dependent rect. 16 7
574 498.13 humidity 50.0 10 > th dose independent rect. 16 7
590 498.63 radiation 30.0 10 < th dose dependent rect. 16 7
613 499.77 temperature 30.0 270 < th dose dependent rect. 23 1
618 499.98 precipitation 0.1 10 < th dose independent rect. 16 7
619 499.98 precipitation 0.1 10 < th dose dependent rect. 16 7
630 500.34 wind 1.0 270 > th dose independent rect. 20 7
650 501.32 radiation 40.0 90 < th dose dependent rect. 13 10
658 501.87 wind 1.0 10 > th dose independent rect. 16 7
661 501.94 humidity 50.0 270 > th dose independent rect. 21 17
676 502.55 radiation 10.0 10 < th dose independent rect. 7 16
701 503.40 temperature 10.0 270 > th dose dependent rect. 3 18
702 503.48 radiation 10.0 10 < th dose independent rect. 10 13
704 503.57 radiation 30.0 10 < th dose independent rect. 16 7
710 503.73 temperature 10.0 10 > th dose independent rect. 16 7
712 503.73 atmosphere 1010.0 10 < th dose independent rect. 16 7
715 503.73 temperature 10.0 10 > th dose independent rect. 23 17
720 503.91 wind 9.0 270 < th dose dependent rect. 2 7
729 504.11 atmosphere 995.0 10 > th dose independent rect. 16 7
731 504.19 radiation 40.0 270 < th dose dependent rect. 15 17
735 504.41 humidity 50.0 270 > th dose independent rect. 14 7
744 504.68 atmosphere 1015.0 270 < th dose independent rect. 13 21
759 505.31 wind 1.0 270 > th dose independent rect. 9 17
762 505.41 wind 1.0 270 > th dose independent rect. 21 17
763 505.49 radiation 1.0 10 > th dose independent rect. 10 6
788 506.38 wind 9.0 10 < th dose independent rect. 16 7
794 506.51 atmosphere 995.0 270 > th dose independent rect. 15 5
812 507.01 humidity 50.0 10 > th dose independent rect. 16 18
852 508.39 atmosphere 995.0 270 > th dose independent rect. 9 17
916 509.78 atmosphere 995.0 10 > th dose independent rect. 23 17
921 509.91 temperature 10.0 1440 > th dose independent rect. 17 7
924 509.91 radiation 30.0 1440 < th dose independent rect. 17 7
930 509.91 temperature 10.0 1440 > th dose independent rect. 24 17
939 510.04 wind 9.0 10 < th dose independent rect. 23 17
965 511.32 radiation 20.0 90 < th dose independent rect. 13 10
993 511.55 humidity 50.0 270 > th dose independent rect. 8 7