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Os05g0589200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Sigma-70 region 2 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0292) R2 : 0.953
β1 : -0.758 (0.107) R2dD : 0.00548 R2D : 0.0163
β2 : 2.75 (0.0751) R2dC : 0.159 R2C : 0.376
β3 : -6.92 (0.102) R2dE : 0.568 R2E : 0.785
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.18 (0.0632) R2dN8 : 0.00118 R2N8 : -0.00578
σ : 0.545
deviance : 136.79
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C
peak time of C : 13.6
E
wheather : temperature
threshold : 9.46
memory length : 739
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.7
open length of G : 11

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
129.6 0.535 11.1 -0.985 2.78 -6.93 0.62 -2.07 0.128 13.5 9.55 737 18.8 10.9
133.38 0.538 11.1 -0.81 2.78 -6.86 0.936 -- 0.158 13.6 9.367 740 18.7 11
130.49 0.532 11.1 -0.983 2.72 -7.04 -- -2.23 0.135 13.4 9.15 735 18.8 11
136.79 0.545 11.1 -0.758 2.75 -6.92 -- -- 0.18 13.6 9.46 739 18.7 11
162.86 0.594 11.1 -0.989 -- -7.68 -- -1.56 0.103 -- 7.007 469 18.6 12.4
323.48 0.843 11.3 -1.53 6.77 -- 2.47 -- -0.512 16.5 -- -- -- --
339.9 0.863 11.3 -1.51 6.78 -- -- -- -0.499 16.5 -- -- -- --
170.16 0.608 11.1 -0.912 -- -7.76 -- -- 0.131 -- 7.152 477 18.5 12.4
150.51 0.571 11.1 -- 2.6 -7.01 -- -- 0.278 13.7 10.05 756 18.4 11.1
2797.11 2.47 11.3 -1.78 -- -- -- -- -0.678 -- -- -- -- --
400.2 0.936 11.3 -- 6.81 -- -- -- -0.331 16.5 -- -- -- --
188.67 0.64 11.1 -- -- -7.84 -- -- 0.28 -- 7.89 482 18.4 12.6
2880.36 2.51 11.2 -- -- -- -- -- -0.481 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 132.15 temperature 10 720 > th dose dependent rect. 19 11
3 137.48 temperature 10 720 > th dose dependent rect. 18 13
9 143.44 temperature 30 720 < th dose dependent rect. 21 6
52 157.22 temperature 25 720 < th dose dependent rect. 22 3
59 158.27 temperature 25 270 < th dose dependent rect. 22 11
115 165.60 temperature 25 720 < th dose dependent sin 14 NA
126 166.49 temperature 25 10 < th dose dependent sin 6 NA
151 168.92 temperature 25 270 < th dose dependent sin 8 NA
202 174.38 temperature 10 10 > th dose dependent sin 7 NA
205 174.64 temperature 20 270 > th dose independent rect. 1 22
224 175.54 temperature 10 720 > th dose dependent sin 12 NA
303 180.81 temperature 20 270 > th dose independent rect. 18 13
377 185.26 temperature 25 10 < th dose dependent rect. 23 13
392 186.01 temperature 10 270 > th dose dependent sin 9 NA
403 186.71 temperature 20 720 > th dose independent rect. 19 10
501 190.13 temperature 20 720 > th dose independent rect. 10 20
559 192.66 temperature 20 270 > th dose independent sin 8 NA
581 193.43 temperature 20 270 < th dose independent rect. 22 12
623 194.70 temperature 20 270 > th dose dependent rect. 1 7
636 195.34 temperature 20 270 < th dose independent sin 8 NA
763 199.16 temperature 20 270 > th dose independent rect. 1 10
837 201.02 temperature 20 720 > th dose independent sin 14 NA
855 201.61 temperature 25 720 < th dose dependent no NA NA
860 201.72 temperature 20 720 < th dose independent rect. 17 12
888 202.36 temperature 25 720 < th dose dependent rect. 3 23
927 203.37 temperature 20 720 < th dose independent rect. 12 17
936 203.52 temperature 20 720 < th dose independent sin 14 NA
967 204.13 temperature 20 10 > th dose dependent rect. 20 13
978 204.23 temperature 20 720 > th dose independent rect. 18 20