Os11g0448400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Sigma factor SIG2A.
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Os11g0448400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Sigma factor SIG2A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.42 | 0.413 | 11.6 | 1.17 | 1.75 | 1.42 | -0.542 | -0.78 | -0.288 | 19.3 | 20.96 | 30 | -- | -- |
| 77.92 | 0.411 | 11.6 | 1.14 | 1.76 | 1.6 | -0.569 | -- | -0.292 | 19.3 | 21.04 | 27 | -- | -- |
| 78.14 | 0.415 | 11.6 | 1.19 | 1.75 | 1.37 | -- | -0.858 | -0.285 | 19.3 | 21.1 | 27 | -- | -- |
| 78.74 | 0.413 | 11.6 | 1.15 | 1.75 | 1.62 | -- | -- | -0.291 | 19.3 | 21 | 27 | -- | -- |
| 240.07 | 0.726 | 11.5 | 1.19 | -- | 1.44 | -- | -1.02 | -0.296 | -- | 21.33 | 9 | -- | -- |
| 98.51 | 0.465 | 11.6 | 0.865 | 1.77 | -- | -0.659 | -- | -0.422 | 19.6 | -- | -- | -- | -- |
| 99.72 | 0.468 | 11.6 | 0.88 | 1.77 | -- | -- | -- | -0.423 | 19.6 | -- | -- | -- | -- |
| 241.13 | 0.726 | 11.6 | 1.13 | -- | 1.66 | -- | -- | -0.305 | -- | 21.33 | 9 | -- | -- |
| 110.58 | 0.49 | 11.6 | -- | 1.74 | 1.01 | -- | -- | -0.441 | 19.4 | 21.3 | 10 | -- | -- |
| 267.35 | 0.764 | 11.6 | 0.856 | -- | -- | -- | -- | -0.45 | -- | -- | -- | -- | -- |
| 120.14 | 0.513 | 11.6 | -- | 1.76 | -- | -- | -- | -0.521 | 19.7 | -- | -- | -- | -- |
| 271.89 | 0.77 | 11.6 | -- | -- | 1.05 | -- | -- | -0.446 | -- | 22.5 | 2 | -- | -- |
| 286.67 | 0.79 | 11.6 | -- | -- | -- | -- | -- | -0.544 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.73 | temperature | 20.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 3 | 75.58 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 4 | 75.70 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 6 | 75.79 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 7 | 75.88 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 8 | 3 |
| 8 | 75.91 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 24 | 76.88 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 31 | 77.28 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 32 | 77.32 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 47 | 77.61 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 56 | 77.83 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 23 |
| 61 | 77.92 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 62 | 77.92 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 69 | 78.08 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 24 | 5 |
| 87 | 78.32 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 104 | 78.47 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 20 | 12 |
| 115 | 78.55 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 19 |
| 118 | 78.58 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 120 | 78.59 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 121 | 78.59 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 123 | 78.60 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 134 | 78.64 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 135 | 78.64 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 144 | 78.68 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 146 | 78.70 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 147 | 78.70 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 150 | 78.71 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 153 | 78.73 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 159 | 78.75 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 172 | 78.80 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 173 | 78.81 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 185 | 78.86 | temperature | 20.0 | 30 | > th | dose independent | rect. | 1 | 23 |
| 186 | 78.87 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 188 | 78.87 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 191 | 78.88 | temperature | 20.0 | 30 | < th | dose independent | rect. | 10 | 20 |
| 212 | 78.93 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 220 | 78.94 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 232 | 79.02 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 243 | 79.04 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 15 |
| 250 | 79.06 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 21 | 8 |
| 268 | 79.11 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 270 | 79.11 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 3 | 16 |
| 302 | 79.21 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 319 | 79.22 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 9 | 22 |
| 329 | 79.24 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 332 | 79.24 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 339 | 79.24 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 360 | 79.29 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 364 | 79.31 | temperature | 20.0 | 30 | < th | dose dependent | no | NA | NA |
| 372 | 79.31 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 373 | 79.31 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 377 | 79.32 | temperature | 20.0 | 4320 | < th | dose dependent | sin | 2 | NA |
| 381 | 79.32 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 382 | 79.32 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 383 | 79.33 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 387 | 79.33 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 394 | 79.33 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 401 | 79.35 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 404 | 79.35 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 412 | 79.36 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 423 | 79.39 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 450 | 79.43 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 482 | 79.46 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 517 | 79.50 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 565 | 79.53 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 8 | 23 |
| 611 | 79.56 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 5 | 23 |
| 650 | 79.59 | temperature | 20.0 | 4320 | < th | dose dependent | no | NA | NA |
| 657 | 79.59 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 11 | 23 |
| 663 | 79.60 | temperature | 20.0 | 30 | < th | dose independent | rect. | 23 | 23 |
| 688 | 79.62 | temperature | 20.0 | 30 | < th | dose independent | rect. | 15 | 23 |
| 691 | 79.62 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 699 | 79.63 | temperature | 20.0 | 30 | < th | dose independent | rect. | 1 | 23 |
| 701 | 79.63 | temperature | 20.0 | 30 | < th | dose independent | rect. | 19 | 23 |
| 702 | 79.63 | temperature | 20.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 711 | 79.63 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 17 | 23 |
| 713 | 79.64 | temperature | 20.0 | 30 | < th | dose independent | no | NA | NA |
| 715 | 79.64 | temperature | 20.0 | 30 | < th | dose independent | rect. | 17 | 23 |
| 722 | 79.65 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 761 | 79.68 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 771 | 79.69 | temperature | 20.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 772 | 79.69 | temperature | 20.0 | 30 | < th | dose independent | rect. | 5 | 23 |
| 783 | 79.70 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 21 |
| 793 | 79.72 | temperature | 20.0 | 30 | > th | dose independent | no | NA | NA |
| 816 | 79.74 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 821 | 79.74 | temperature | 20.0 | 30 | < th | dose independent | rect. | 13 | 23 |
| 838 | 79.76 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 24 | 7 |
| 860 | 79.78 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 17 | 15 |
| 927 | 79.84 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 959 | 79.87 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 5 | 5 |
| 964 | 79.88 | temperature | 20.0 | 30 | < th | dose dependent | sin | 7 | NA |