Os03g0271100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Sigma factor SIG2B.
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Os03g0271100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Sigma factor SIG2B.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.13 | 0.376 | 13.2 | -0.344 | 1.34 | 1.12 | 0.957 | -0.275 | -0.379 | 17.9 | 0.2448 | 100 | -- | -- |
| 64.44 | 0.374 | 13.2 | -0.336 | 1.37 | 1.14 | 1.06 | -- | -0.382 | 17.8 | 0.04 | 102 | -- | -- |
| 66.27 | 0.379 | 13.2 | -0.352 | 1.33 | 1.06 | -- | -0.337 | -0.372 | 18 | 0.25 | 100 | -- | -- |
| 66.93 | 0.381 | 13.2 | -0.352 | 1.32 | 1.06 | -- | -- | -0.372 | 18 | 0.2543 | 97 | -- | -- |
| 121.6 | 0.516 | 13.1 | -0.38 | -- | 1.06 | -- | -0.38 | -0.436 | -- | 0.25 | 100 | -- | -- |
| 82.04 | 0.425 | 13.2 | -0.45 | 1.67 | -- | -0.0601 | -- | -0.461 | 21.2 | -- | -- | -- | -- |
| 82.05 | 0.424 | 13.2 | -0.448 | 1.67 | -- | -- | -- | -0.461 | 21.2 | -- | -- | -- | -- |
| 122.54 | 0.518 | 13.1 | -0.39 | -- | 1.05 | -- | -- | -0.44 | -- | 0.2543 | 97 | -- | -- |
| 70.27 | 0.39 | 13.2 | -- | 1.36 | 1.06 | -- | -- | -0.346 | 18 | 0.05968 | 102 | -- | -- |
| 244.21 | 0.73 | 13.1 | -0.442 | -- | -- | -- | -- | -0.47 | -- | -- | -- | -- | -- |
| 87.34 | 0.437 | 13.2 | -- | 1.67 | -- | -- | -- | -0.411 | 21.1 | -- | -- | -- | -- |
| 126.56 | 0.526 | 13.1 | -- | -- | 1.06 | -- | -- | -0.397 | -- | 0.2543 | 97 | -- | -- |
| 249.37 | 0.737 | 13.1 | -- | -- | -- | -- | -- | -0.421 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.67 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 13 |
| 2 | 54.08 | radiation | 1.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 13 | 54.11 | radiation | 1.0 | 90 | < th | dose dependent | sin | 11 | NA |
| 16 | 54.76 | radiation | 1.0 | 90 | < th | dose independent | sin | 12 | NA |
| 18 | 55.17 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 19 | 55.63 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 21 | 55.76 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 25 | 55.93 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 26 | 55.93 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 28 | 55.98 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 34 | 56.17 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 40 | 56.44 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 44 | 56.54 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 48 | 56.58 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 50 | 56.58 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 51 | 56.58 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 53 | 56.58 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 54 | 56.58 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 55 | 56.58 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 56 | 56.58 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 60 | 56.69 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 61 | 56.69 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 67 | 56.86 | radiation | 1.0 | 90 | > th | dose independent | sin | 11 | NA |
| 152 | 57.63 | temperature | 20.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 162 | 57.77 | wind | 7.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 169 | 57.93 | wind | 5.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 173 | 57.96 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 174 | 57.97 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 2 |
| 175 | 57.97 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 178 | 58.01 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 21 |
| 184 | 58.07 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 185 | 58.10 | radiation | 30.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 189 | 58.11 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 191 | 58.11 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 192 | 58.11 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 194 | 58.11 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 195 | 58.11 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 223 | 58.30 | temperature | 20.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 227 | 58.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 228 | 58.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 229 | 58.42 | wind | 5.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 230 | 58.42 | radiation | 30.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 245 | 58.58 | wind | 9.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 251 | 58.61 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 3 |
| 252 | 58.61 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 253 | 58.61 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 254 | 58.62 | humidity | 70.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 267 | 58.64 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 287 | 58.71 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 289 | 58.71 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 290 | 58.71 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 292 | 58.71 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 293 | 58.71 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 294 | 58.71 | temperature | 10.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 297 | 58.74 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 317 | 58.93 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 451 | 59.50 | wind | 1.0 | 90 | > th | dose independent | rect. | 8 | 21 |
| 489 | 59.67 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 17 | 14 |
| 515 | 59.86 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 563 | 60.08 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 16 | 11 |
| 582 | 60.21 | radiation | 1.0 | 270 | < th | dose independent | rect. | 15 | 12 |
| 590 | 60.26 | radiation | 1.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 665 | 60.53 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 10 | 17 |
| 696 | 60.61 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 701 | 60.64 | radiation | 1.0 | 270 | < th | dose independent | rect. | 10 | 17 |
| 706 | 60.66 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 8 | 21 |
| 708 | 60.66 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 8 | 21 |
| 720 | 60.74 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 15 |
| 722 | 60.74 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 742 | 60.83 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 775 | 60.93 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 776 | 60.93 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 785 | 61.01 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 799 | 61.09 | wind | 1.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 800 | 61.09 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 801 | 61.09 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 5 | 2 |
| 862 | 61.27 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 863 | 61.27 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 870 | 61.32 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 880 | 61.40 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 16 |
| 883 | 61.40 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 909 | 61.53 | humidity | 50.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 926 | 61.60 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 8 | 21 |
| 993 | 61.84 | wind | 7.0 | 270 | < th | dose independent | rect. | 18 | 9 |