BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0271100 Os03g0271100|AK060821
(540 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0271100 Similar to Sigma factor SIG2B 996 0.0
Os11g0448400 Similar to Sigma factor SIG2A 524 e-149
Os08g0242800 Similar to Sigma factor SIG6 208 8e-54
Os08g0163400 Sigma-70 factor family protein 166 5e-41
Os05g0586600 Plastid sigma factor SIG5 134 2e-31
Os05g0589200 Sigma-70 region 2 domain containing protein 122 7e-28
>Os03g0271100 Similar to Sigma factor SIG2B
Length = 540
Score = 996 bits (2575), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/540 (90%), Positives = 490/540 (90%)
Query: 1 MACLAPQLKWPLSTRAAAFREHGGAGIGGFRTVRLHCAVSTTALVEAESSDSLAPGARRL 60
MACLAPQLKWPLSTRAAAFREHGGAGIGGFRTVRLHCAVSTTALVEAESSDSLAPGARRL
Sbjct: 1 MACLAPQLKWPLSTRAAAFREHGGAGIGGFRTVRLHCAVSTTALVEAESSDSLAPGARRL 60
Query: 61 VVYDGAVAPPPLPGGFGEAILNQXXXXXXXXXXXXXXXXXXXXXXXXXXRMSQTEQRHRP 120
VVYDGAVAPPPLPGGFGEAILNQ RMSQTEQRHRP
Sbjct: 61 VVYDGAVAPPPLPGGFGEAILNQEAVVAAAAAEAVALARAAAEVAGEVVRMSQTEQRHRP 120
Query: 121 DFVTTHDTEDNYLAREILRAEAGLGARYADACLSEDAGFSSIFSDESEVDDDEQCVQGVA 180
DFVTTHDTEDNYLAREILRAEAGLGARYADACLSEDAGFSSIFSDESEVDDDEQCVQGVA
Sbjct: 121 DFVTTHDTEDNYLAREILRAEAGLGARYADACLSEDAGFSSIFSDESEVDDDEQCVQGVA 180
Query: 181 VKSVRQSEXXXXXXXXXXXXXKSFSGRNPVAASSSARKKRLKGCRSPLGCFYKMTGRRLL 240
VKSVRQSE KSFSGRNPVAASSSARKKRLKGCRSPLGCFYKMTGRRLL
Sbjct: 181 VKSVRQSERRARRVRAAMKAAKSFSGRNPVAASSSARKKRLKGCRSPLGCFYKMTGRRLL 240
Query: 241 TAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNYGISCK 300
TAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNYGISCK
Sbjct: 241 TAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNYGISCK 300
Query: 301 NTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYSHWWIK 360
NTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYSHWWIK
Sbjct: 301 NTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYSHWWIK 360
Query: 361 QAIRKSVLEQTQIIRLPAHMAEASSRVKECXXXXXXXXXXXPTNEEIASDTGMPLRRVEA 420
QAIRKSVLEQTQIIRLPAHMAEASSRVKEC PTNEEIASDTGMPLRRVEA
Sbjct: 361 QAIRKSVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPLRRVEA 420
Query: 421 AMSLPKYTVSLTSKVGCTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQ 480
AMSLPKYTVSLTSKVGCTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQ
Sbjct: 421 AMSLPKYTVSLTSKVGCTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQ 480
Query: 481 VIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYLQPVESW 540
VIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYLQPVESW
Sbjct: 481 VIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYLQPVESW 540
>Os11g0448400 Similar to Sigma factor SIG2A
Length = 564
Score = 524 bits (1349), Expect = e-149, Method: Compositional matrix adjust.
Identities = 267/415 (64%), Positives = 313/415 (75%), Gaps = 7/415 (1%)
Query: 131 NYLAREILRAE--AGLGARYADACLSEDAGFSSIFSDESEVDDDEQCVQGVAVKSVRQSE 188
NYLA EILR E + +Y+D LSE+ I SDE+E+D D Q + +AVKS +
Sbjct: 152 NYLANEILRTEMKPNILDKYSDGILSEEIESYGILSDEAELDGDTQDIPSIAVKSA-RQT 210
Query: 189 XXXXXXXXXXXXXKSFSGRNPVAASSSARKKRLKGCRS---PLGCFYKMTGRRLLTAKQE 245
+ +P A+SS +KKR KG S PLG +KMTGRRLLTAK+E
Sbjct: 211 ERRARRTRAAIKAATIVRTSPKPATSS-KKKRSKGASSGTNPLGSLWKMTGRRLLTAKEE 269
Query: 246 VEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNYGISCKNTMVK 305
VEFS+GIQDLLKLEAIQ ELA YNGG+PTF+QWA AAG DE TLRKRL++GI CKN MV
Sbjct: 270 VEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDHGIYCKNRMVT 329
Query: 306 SNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYSHWWIKQAIRK 365
SNVRLVISIAREFEGPGME DLIQEG+QGL+RGAEKFDASKGFRFSTYSHWWIKQA+RK
Sbjct: 330 SNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAMRK 389
Query: 366 SVLEQTQIIRLPAHMAEASSRVKECXXXXXXXXXXXPTNEEIASDTGMPLRRVEAAMSLP 425
SV EQ+QI RLPAHM EAS RVKEC PTNEEIA+DTGMP++RVEAA++LP
Sbjct: 390 SVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRVEAAVNLP 449
Query: 426 KYTVSLTSKVGCTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRYR 485
KY+VSL SK+G TDMTYQE+T D + ETAEEML+R MK DV +ALD L+ RERQV+ R
Sbjct: 450 KYSVSLDSKIGSTDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTLR 509
Query: 486 FGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYLQPVESW 540
FG++DGR+RTL +IG MGVSRERIRQIE AFRKLR +K+V +L+ YL PV +W
Sbjct: 510 FGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYLVPVGNW 564
>Os08g0242800 Similar to Sigma factor SIG6
Length = 572
Score = 208 bits (529), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 174/301 (57%), Gaps = 10/301 (3%)
Query: 239 LLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNYGIS 298
LTAK+E IQ L+K+E ++L G EPT ++WAEA G L+ + G
Sbjct: 273 FLTAKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRR 332
Query: 299 CKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYSHWW 358
C+ M +SN RLVI +AR++EG G++ DL+Q+G GL++ EKF+ SKG RF TY++WW
Sbjct: 333 CREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAYWW 392
Query: 359 IKQAIRKSVLEQTQIIRLPAHMAEASSRV----KECXXXXXXXXXXXPTNEEIASDTGMP 414
I+Q+I+KS+ + +++IRLP + +V EC PTN +A G+
Sbjct: 393 IRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMEC-----IMEGEQPTNANVARRAGIT 447
Query: 415 LRRVEAAMSLPKYTVSLTSKVGCTD-MTYQEITPDTSTETAEEMLHRWLMKEDVDRALDG 473
+ ++ + + S+ V + +T+QEIT D + E + + R +M++ V L
Sbjct: 448 IEKLAKLRAKTRKPRSMQDHVWSDEGVTFQEITEDPNVEPPDLSVDRMMMRQQVRDFLGI 507
Query: 474 LSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHY 533
LSPRE+++I +RFG+ DG +TLH IG + G+S+ERIRQ++ A KL+ +Q Y
Sbjct: 508 LSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEKLKRSASLQGFDVY 567
Query: 534 L 534
Sbjct: 568 F 568
>Os08g0163400 Sigma-70 factor family protein
Length = 520
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 103/310 (33%), Positives = 164/310 (52%), Gaps = 13/310 (4%)
Query: 235 TGRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLN 294
+ LLT KQ V S I+D + L+ + +L G EP++ Q A + LR R++
Sbjct: 213 VSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMH 272
Query: 295 YGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTY 354
+ + SN+RLVISIA++++ G+E +DLIQ G+ GL+RG EKFDAS+GFR STY
Sbjct: 273 ESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTY 332
Query: 355 SHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECXXXXXXXXXXXPTNEEIASDTGMP 414
+WWI+Q + +++ E ++ RLP ++ E ++ PT E IA +
Sbjct: 333 VYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRGA-KYELEDQGIAPTIENIAGSLNIS 391
Query: 415 LRRVEAAMSLPKYTVSLTSKV-----GCTDMTYQEITPDTSTETAEEMLH---RWLMKED 466
++V A +SL + G T D + A + H W +KE+
Sbjct: 392 EKKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQN--VANDPWHGFEEWYLKEE 449
Query: 467 VDRALDG-LSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRK 525
V++ L+ L+ RER +IR G+ + T DI R G+SRER+RQ+ L+A KL+
Sbjct: 450 VNKLLNSTLNERERDIIRLYHGIGK-QCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAA 508
Query: 526 KVQSLQHYLQ 535
+ ++L+ L+
Sbjct: 509 RRKNLEALLE 518
>Os05g0586600 Plastid sigma factor SIG5
Length = 500
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 151/302 (50%), Gaps = 10/302 (3%)
Query: 239 LLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNYGIS 298
+LT+ Q + + +Q + + +++ L + EP +Q AEA +R+ L G +
Sbjct: 203 VLTSAQSIRLFRIMQPMKAIMEMKENLENEVQSEPNDAQLAEAMNMSVLQMRRHLEVGRA 262
Query: 299 CKNTMVKSNVRLVISIAREFEGPGME----FSDLIQEGIQGLVRGAEKFDASKGFRFSTY 354
+N ++K N+RLV+ ++ P M F D+ Q G GL+ ++F+ +GFR STY
Sbjct: 263 ARNKLIKHNLRLVLYTINKYY-PDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTY 321
Query: 355 SHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECXXXXXXXXXXXPTNEEIASDTGM- 413
+ +WI+ +I +++ + R P M + PT EE+ G+
Sbjct: 322 ALFWIRHSIVRAIT-LSNFTRFPFAMESERQEIHRAREELAFELGRAPTEEEVMKKVGLS 380
Query: 414 PLR-RVEAAMSLPKYTVSLTSKVGCTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALD 472
P R R M+ P Y++ ++V ++ E+T D + + H L++ +D LD
Sbjct: 381 PARYRDVVRMTRPTYSLHARNRVTQEELI-NEVTDDDAI-GVDTSSHNTLLRLAIDDLLD 438
Query: 473 GLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQH 532
L P+E VIR RFG+D RTL +I + +SRE +R+ EL A KL+ +V+ L+
Sbjct: 439 SLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVEYLRR 498
Query: 533 YL 534
Y+
Sbjct: 499 YM 500
>Os05g0589200 Sigma-70 region 2 domain containing protein
Length = 464
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 109/201 (54%), Gaps = 1/201 (0%)
Query: 236 GRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNY 295
GRR +++ I++ LE I++ L +G E + + WA+AAG DE LR RL
Sbjct: 257 GRRRSIVREQSALLVTIKECANLEKIRENLLK-DGSEVSHASWAKAAGIDEALLRSRLQE 315
Query: 296 GISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYS 355
G C+ ++ + LV IA+ + G G F DL+Q G G++ GAEKFD+ KG +FSTY
Sbjct: 316 GYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLLQAGKMGVLNGAEKFDSQKGCKFSTYV 375
Query: 356 HWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECXXXXXXXXXXXPTNEEIASDTGMPL 415
+WI++A+ + E + +I+LPA M +V+E P + EIA+ G+ +
Sbjct: 376 KYWIRKAMLALLAENSGVIQLPARMEGIIRKVREARRAIRYNTGRNPPDAEIAALIGVSV 435
Query: 416 RRVEAAMSLPKYTVSLTSKVG 436
V A + VSL +++G
Sbjct: 436 ANVRLARKCSRRVVSLYTEIG 456
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,612,472
Number of extensions: 632687
Number of successful extensions: 1739
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1731
Number of HSP's successfully gapped: 6
Length of query: 540
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 434
Effective length of database: 11,501,117
Effective search space: 4991484778
Effective search space used: 4991484778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)