BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0271100 Os03g0271100|AK060821
(540 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08540.1 | chr1:2703461-2706696 FORWARD LENGTH=573 351 7e-97
AT2G36990.1 | chr2:15537502-15540016 REVERSE LENGTH=548 227 1e-59
AT3G53920.1 | chr3:19961041-19963820 REVERSE LENGTH=572 196 3e-50
AT5G13730.1 | chr5:4429132-4430744 REVERSE LENGTH=420 156 3e-38
AT1G64860.1 | chr1:24098497-24100746 FORWARD LENGTH=503 144 1e-34
AT5G24120.1 | chr5:8157794-8159746 REVERSE LENGTH=518 116 3e-26
>AT1G08540.1 | chr1:2703461-2706696 FORWARD LENGTH=573
Length = 572
Score = 351 bits (900), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 180/364 (49%), Positives = 246/364 (67%), Gaps = 11/364 (3%)
Query: 178 GVAVKSVRQSEXXXXXXXXXXXXXKSFSGRNPVAASSSARKKRLKG----CRSPLGCFYK 233
+AV+S RQ+E K+ SG V SS +KKRL PL + +
Sbjct: 209 SLAVRSTRQTERKARRAKGLE---KTASGIPSVKTGSSPKKKRLVAQEVDHNDPLR-YLR 264
Query: 234 MT--GRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRK 291
MT +LLT ++E E S GIQDLLKLE +Q EL +G +PTF+QWA AAG D+ +LR+
Sbjct: 265 MTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQ 324
Query: 292 RLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRF 351
R+++G CK+ M+KSN+RLVISIA+ ++G GM DL+QEG +GLVRGAEKFDA+KGF+F
Sbjct: 325 RIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKF 384
Query: 352 STYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECXXXXXXXXXXXPTNEEIASDT 411
STY+HWWIKQA+RKS+ +Q+++IRLP HM EA+ RVKE P NEEIA T
Sbjct: 385 STYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEAT 444
Query: 412 GMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQEITPDTSTETAEEMLHRWLMKEDVDRA 470
G+ ++R+ A + PK SL K+G ++ E+ D T+E++L + M++D+D+
Sbjct: 445 GLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKV 504
Query: 471 LDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSL 530
LD L RE+QVIR+RFGM+DGR++TL +IG +MGVSRER+RQIE AFRKL+ +K+ L
Sbjct: 505 LDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHL 564
Query: 531 QHYL 534
Q YL
Sbjct: 565 QQYL 568
>AT2G36990.1 | chr2:15537502-15540016 REVERSE LENGTH=548
Length = 547
Score = 227 bits (579), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 191/328 (58%), Gaps = 4/328 (1%)
Query: 210 VAASSSARKKRLKGCRSPLGCFYKMTG---RRLLTAKQEVEFSQGIQDLLKLEAIQKELA 266
V +SA+KK +G + + G ++LLTAK+E E IQ LLKLE ++ +L
Sbjct: 215 VPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLE 274
Query: 267 HYNGGEPTFSQWAEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFS 326
NG EPT +WAEA G L+ ++ G S + ++ +N+RLV+ IA++++ G+ F
Sbjct: 275 SQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQ 334
Query: 327 DLIQEGIQGLVRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSR 386
DL+QEG GL++ EKF G RF+TY++WWI+Q+IRKS+ + ++ IRLP ++ +
Sbjct: 335 DLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGK 394
Query: 387 VKECXXXXXXXXXXXPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGC-TDMTYQEI 445
V E P+ EE+A G+ +++ + + +S+ + D T+QEI
Sbjct: 395 VSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEI 454
Query: 446 TPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGV 505
TPD+ ET + + LM+ V L+ LSP+ER++I+ RFG+D G+ R+L +IG + G+
Sbjct: 455 TPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGL 514
Query: 506 SRERIRQIELVAFRKLRGRKKVQSLQHY 533
S+ER+RQ+E A +L+ L Y
Sbjct: 515 SKERVRQLESRALYRLKQNMNSHGLHAY 542
>AT3G53920.1 | chr3:19961041-19963820 REVERSE LENGTH=572
Length = 571
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 176/305 (57%), Gaps = 2/305 (0%)
Query: 233 KMTGRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKR 292
K +R ++ E E S G++ + +E I+ +L +G + S WA AAG +E L +
Sbjct: 266 KYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRN 325
Query: 293 LNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFS 352
L+YG C++ +VKS LV+ +AR + G G+ DLIQ G G+++GAE+FD ++G++FS
Sbjct: 326 LHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFS 385
Query: 353 TYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECXXXXXXXX-XXXPTNEEIASDT 411
TY +WI++++ V + + +P+ + + +++ +EEIA T
Sbjct: 386 TYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLT 445
Query: 412 GMPLRRVEAAMSLPKYTVSLTSKVG-CTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRA 470
G ++++ AA K S+ KVG C + E TPDT+ E+ EE + R + D+
Sbjct: 446 GHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDL 505
Query: 471 LDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSL 530
L+GL PRE+QV+ R+G+ D R ++L +IG+L+ VS+E IR+IE A KLR + + L
Sbjct: 506 LEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDL 565
Query: 531 QHYLQ 535
++YL
Sbjct: 566 RYYLN 570
>AT5G13730.1 | chr5:4429132-4430744 REVERSE LENGTH=420
Length = 419
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 132/227 (58%), Gaps = 3/227 (1%)
Query: 309 RLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYSHWWIKQAIRKSVL 368
RLV+SIA ++G G+ DLIQEG GL+RGAE+FD +G++ STY +WWIKQAI +++
Sbjct: 189 RLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIA 248
Query: 369 EQTQIIRLPAHMAEASSRVKECXXXXXXXXXXXPTNEEIASDTGMPLRRVEAAMSLPKYT 428
++++++LP M E +++V E P+ EEIA + + V A+ +
Sbjct: 249 HKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSP 308
Query: 429 VSLTSKVGCTD--MTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRYRF 486
VSL +V + MT QEI EEM+ R MK ++++ L L+ RE +V+ F
Sbjct: 309 VSL-DRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYF 367
Query: 487 GMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHY 533
G++ + +IG+ + +SRER+RQI +A +KLR V L+ Y
Sbjct: 368 GLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414
>AT1G64860.1 | chr1:24098497-24100746 FORWARD LENGTH=503
Length = 502
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 152/291 (52%), Gaps = 9/291 (3%)
Query: 239 LLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNYGIS 298
+L+ + V S+ I+ L+L+ + L G EP+ Q A + L+ L
Sbjct: 199 VLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHL 258
Query: 299 CKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYSHWW 358
+ + SNVRLV+SIA+ ++ G E SDL+Q G+ GL+RG EKFD+SKGFR STY +WW
Sbjct: 259 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 318
Query: 359 IKQAIRKSVLEQTQIIRLPAHMAEASSRVKECXXXXXXXXXXXPTNEEIASDTGMPLRRV 418
I+Q + +++++ ++ +RLP H+ E ++ P+ + IA M ++V
Sbjct: 319 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNA-KLRLQEKGITPSIDRIAESLNMSQKKV 377
Query: 419 EAAMSLPKYTVSLT-----SKVGCTDMTYQEITPDTSTETAEEMLHRWL-MKEDVDRALD 472
A SL S G T+ DT E + L +KE+V + +
Sbjct: 378 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 437
Query: 473 G-LSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLR 522
L RE+++IR +G+D L T DI + +G+SRER+RQ+ LVA KL+
Sbjct: 438 ATLGEREKEIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 487
>AT5G24120.1 | chr5:8157794-8159746 REVERSE LENGTH=518
Length = 517
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 142/294 (48%), Gaps = 13/294 (4%)
Query: 247 EFSQGIQDLLKL-EAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNYGISCKNTMVK 305
+ Q ++ LL++ + +QK L G EP ++ A ++K++ G + +N ++K
Sbjct: 230 KLMQPMKALLEVKDVLQKSL----GREPREAEIAGEINMTAGEVKKKIEIGRAARNKLIK 285
Query: 306 SNVRLVISIAREF-----EGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYSHWWIK 360
N+RLV+ + ++ GP +F DL Q G++GL+ ++F+ + FR STY +WI+
Sbjct: 286 HNLRLVLFVMNKYFHEFTNGP--KFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIR 343
Query: 361 QAIRKSVLEQTQIIRLPAHMAEASSRVKECXXXXXXXXXXXPTNEEIASDTGMPLRRVEA 420
AI +S + + R+P + + + PT +E+ + R
Sbjct: 344 HAIIRS-MTTSNFTRVPFGLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKITPERYRE 402
Query: 421 AMSLPKYTVSLTSKVGCTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQ 480
+ K +SL SK T + D A L++ +D LD L P+E
Sbjct: 403 VLRAAKPVLSLNSKHSVTQEEFINGITDVDGVGANNSRQPALLRLALDDVLDSLKPKESL 462
Query: 481 VIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYL 534
VIR R+G+D RTL +I + +SRE +R+ E+ A KL+ + +V L+ Y+
Sbjct: 463 VIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHQARVDYLRQYI 516
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.132 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,157,017
Number of extensions: 376400
Number of successful extensions: 839
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 831
Number of HSP's successfully gapped: 6
Length of query: 540
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 437
Effective length of database: 8,282,721
Effective search space: 3619549077
Effective search space used: 3619549077
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)