BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0586400 Os05g0586400|AK068482
(780 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0586400 Conserved hypothetical protein 1531 0.0
Os02g0258300 Zinc finger, FYVE/PHD-type domain containing p... 206 7e-53
Os06g0524300 Hypothetical protein 193 5e-49
Os01g0621300 Conserved hypothetical protein 110 3e-24
>Os05g0586400 Conserved hypothetical protein
Length = 780
Score = 1531 bits (3965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 741/780 (95%), Positives = 741/780 (95%)
Query: 1 MGSEAKEMKYRRRARVPEPFDYGQCGGDRSGVLDWGALKENPVELLRKLDELRDHITRSC 60
MGSEAKEMKYRRRARVPEPFDYGQCGGDRSGVLDWGALKENPVELLRKLDELRDHITRSC
Sbjct: 1 MGSEAKEMKYRRRARVPEPFDYGQCGGDRSGVLDWGALKENPVELLRKLDELRDHITRSC 60
Query: 61 EITDQPRERHRMSRRTASLRPSHAEPPPLGRGPEHYRSRYTGRYGSGFPHSPNDQLHRSM 120
EITDQPRERHRMSRRTASLRPSHAEPPPLGRGPEHYRSRYTGRYGSGFPHSPNDQLHRSM
Sbjct: 61 EITDQPRERHRMSRRTASLRPSHAEPPPLGRGPEHYRSRYTGRYGSGFPHSPNDQLHRSM 120
Query: 121 HRDRYERQPSGRFRQWPERQWENSGYLGGNHHQSTCQCAQCLHGQRAVMQEEHIPMTRYF 180
HRDRYERQPSGRFRQWPERQWENSGYLGGNHHQSTCQCAQCLHGQRAVMQEEHIPMTRYF
Sbjct: 121 HRDRYERQPSGRFRQWPERQWENSGYLGGNHHQSTCQCAQCLHGQRAVMQEEHIPMTRYF 180
Query: 181 AGQQGSHLFDRSPSVSSELDRRSVASSLYSHFSVSKRRTEFFRKKAESFCRPVRGAAPFV 240
AGQQGSHLFDRSPSVSSELDRRSVASSLYSHFSVSKRRTEFFRKKAESFCRPVRGAAPFV
Sbjct: 181 AGQQGSHLFDRSPSVSSELDRRSVASSLYSHFSVSKRRTEFFRKKAESFCRPVRGAAPFV 240
Query: 241 VCSSCNQLLQLPPGKCTARKQIQVRCGSCSEIVSFKLKEVKIHPLVAPTSFPASKTVGSS 300
VCSSCNQLLQLPPGKCTARKQIQVRCGSCSEIVSFKLKEVKIHPLVAPTSFPASKTVGSS
Sbjct: 241 VCSSCNQLLQLPPGKCTARKQIQVRCGSCSEIVSFKLKEVKIHPLVAPTSFPASKTVGSS 300
Query: 301 SRQVNKSFGWYQHQDEGNSSFHKLQAQERWQQNKDLADNISVSSTSSYDRIDKECGXXXX 360
SRQVNKSFGWYQHQDEGNSSFHKLQAQERWQQNKDLADNISVSSTSSYDRIDKECG
Sbjct: 301 SRQVNKSFGWYQHQDEGNSSFHKLQAQERWQQNKDLADNISVSSTSSYDRIDKECGSNRS 360
Query: 361 XXXXXXXXXXXXXANIPKDILCQGDAYSQVETSAFNTGNLQAPVIEDKCVDPFSSRLKDC 420
ANIPKDILCQGDAYSQVETSAFNTGNLQAPVIEDKCVDPFSSRLKDC
Sbjct: 361 SQLLSVSVRRSRLANIPKDILCQGDAYSQVETSAFNTGNLQAPVIEDKCVDPFSSRLKDC 420
Query: 421 SGGDRTSKECSLNIMADSVDANVRDERSDVTYEQNSKDHKEGFGEETVSSRHEQKLKEST 480
SGGDRTSKECSLNIMADSVDANVRDERSDVTYEQNSKDHKEGFGEETVSSRHEQKLKEST
Sbjct: 421 SGGDRTSKECSLNIMADSVDANVRDERSDVTYEQNSKDHKEGFGEETVSSRHEQKLKEST 480
Query: 481 SGFCDDGSMGNIDKLTADNDDTSSLEDGDVSKKYEEKIKQDDNNFQSEFITERYSKCSKE 540
SGFCDDGSMGNIDKLTADNDDTSSLEDGDVSKKYEEKIKQDDNNFQSEFITERYSKCSKE
Sbjct: 481 SGFCDDGSMGNIDKLTADNDDTSSLEDGDVSKKYEEKIKQDDNNFQSEFITERYSKCSKE 540
Query: 541 DNNSVIQVETIATICKQDDLDDCYSELLSPNSEHAIMPSKLESSVNERTNSSSRVSSEAE 600
DNNSVIQVETIATICKQDDLDDCYSELLSPNSEHAIMPSKLESSVNERTNSSSRVSSEAE
Sbjct: 541 DNNSVIQVETIATICKQDDLDDCYSELLSPNSEHAIMPSKLESSVNERTNSSSRVSSEAE 600
Query: 601 LDEVQSAATKNGDSXXXXXXXXXXXXDISLFNQSVDSAKVSINGHSISERVLRKAEKKSG 660
LDEVQSAATKNGDS DISLFNQSVDSAKVSINGHSISERVLRKAEKKSG
Sbjct: 601 LDEVQSAATKNGDSKFFAGFLKKGLKDISLFNQSVDSAKVSINGHSISERVLRKAEKKSG 660
Query: 661 PVGPGSYWYDYRAGFWGVMGHECSGIIPPFIKEFNYPMPKNCAGGNTGVIVNGRELHQKD 720
PVGPGSYWYDYRAGFWGVMGHECSGIIPPFIKEFNYPMPKNCAGGNTGVIVNGRELHQKD
Sbjct: 661 PVGPGSYWYDYRAGFWGVMGHECSGIIPPFIKEFNYPMPKNCAGGNTGVIVNGRELHQKD 720
Query: 721 FELLAGRGLPRISGKSYSVEINGNVIDETTXXXXXXXXXXAPTVEKLKRGFGMHVPEEKS 780
FELLAGRGLPRISGKSYSVEINGNVIDETT APTVEKLKRGFGMHVPEEKS
Sbjct: 721 FELLAGRGLPRISGKSYSVEINGNVIDETTGKKLRKLGKLAPTVEKLKRGFGMHVPEEKS 780
>Os02g0258300 Zinc finger, FYVE/PHD-type domain containing protein
Length = 842
Score = 206 bits (523), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 92/139 (66%), Positives = 105/139 (75%)
Query: 638 AKVSINGHSISERVLRKAEKKSGPVGPGSYWYDYRAGFWGVMGHECSGIIPPFIKEFNYP 697
AKV ING+ IS+R +RKAEK +GP+ PG YWYDYRAGFWGVMG C G+IPP+I E NYP
Sbjct: 700 AKVFINGYPISDRAVRKAEKIAGPIYPGEYWYDYRAGFWGVMGQSCLGMIPPYIPELNYP 759
Query: 698 MPKNCAGGNTGVIVNGRELHQKDFELLAGRGLPRISGKSYSVEINGNVIDETTXXXXXXX 757
MPK CA GNTGV VNGRELHQKD +LL GRGLP G+SY VE++G V DE +
Sbjct: 760 MPKKCAAGNTGVFVNGRELHQKDLDLLVGRGLPDSPGRSYRVEMSGKVSDEVSGEELYCL 819
Query: 758 XXXAPTVEKLKRGFGMHVP 776
APTVEK+KRGFGM VP
Sbjct: 820 GKLAPTVEKMKRGFGMRVP 838
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 131/327 (40%), Gaps = 73/327 (22%)
Query: 31 GVLDWGALKENPVELLRKLDELRDHITRSCEITDQP----------------RERHRMSR 74
G+ L+++ +LLR LDELRD + RSCEIT++P R R+SR
Sbjct: 211 GLNRVNGLEKDRADLLRMLDELRDQVQRSCEITNKPSGSTSTDKAVDASGLYNPRERLSR 270
Query: 75 R---TASLRPSHAEPPPLGRG-----PEHYRSRYTGRYGSGFPHSPNDQLHRSMHRDRYE 126
+ L+ S ++ P G P+ Y P + LH +
Sbjct: 271 LRHGSPQLQRSGSQQSPSLNGQAPCIPQAY-----------APGTAQQDLHGYGEPMAHM 319
Query: 127 RQPSGRFRQWPERQWENSGY------------LGGNHHQSTCQCAQCLHGQRAVMQE--- 171
PS +P R ++N Y G +HQ C C C H + +Q
Sbjct: 320 GAPSYPVGTYPWRNFDNYFYGQYDPDPLISYHHDGFYHQPACSCLHCYHREFLPVQGPPL 379
Query: 172 --EHIPMTRYFAGQQGSHLFDRSPSV--SSELDRRSVASSLYSHFSVSKRRTEFFRKKAE 227
H + Y + D P++ + + R AS +H R +K A+
Sbjct: 380 GFNHRRVPPYVMNNPRVYPVD-GPAMFGTQNYNSRVNASMQRNHM-----RAAMSKKPAQ 433
Query: 228 SFCRPVRGAAPFVVCSSCNQLLQLP-----PGKCTARKQIQVRCGSCSEIVSFKLKEVKI 282
+ C P+ APF +C +C ++LQLP PGK + ++RCGSCS + KL ++
Sbjct: 434 T-CEPIACGAPFTICYNCYEVLQLPKKSPVPGK----DEYKLRCGSCSHALVVKLDGSRL 488
Query: 283 HPLVAPTSFPASKTVGSSSRQVNKSFG 309
+ AP+ P S G S N G
Sbjct: 489 D-VSAPS--PISHISGGSKISSNDGQG 512
>Os06g0524300 Hypothetical protein
Length = 811
Score = 193 bits (490), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 85/139 (61%), Positives = 102/139 (73%)
Query: 638 AKVSINGHSISERVLRKAEKKSGPVGPGSYWYDYRAGFWGVMGHECSGIIPPFIKEFNYP 697
A++ +NG IS+R +RKAEK +G + PG YWYDYRAGFWGVMG C G+IPP+I EFNYP
Sbjct: 669 ARIFVNGFPISDRAVRKAEKLAGEICPGDYWYDYRAGFWGVMGRPCLGMIPPYIPEFNYP 728
Query: 698 MPKNCAGGNTGVIVNGRELHQKDFELLAGRGLPRISGKSYSVEINGNVIDETTXXXXXXX 757
MPKNC GGNTG+ +NGRELHQKD +LL RGL G+SY VE +G V DE +
Sbjct: 729 MPKNCGGGNTGIFINGRELHQKDLDLLVSRGLSDSPGRSYIVENSGKVSDEVSGEELYGL 788
Query: 758 XXXAPTVEKLKRGFGMHVP 776
APTVEK++RGFGM VP
Sbjct: 789 GKLAPTVEKMRRGFGMRVP 807
>Os01g0621300 Conserved hypothetical protein
Length = 78
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 57/75 (76%)
Query: 689 PFIKEFNYPMPKNCAGGNTGVIVNGRELHQKDFELLAGRGLPRISGKSYSVEINGNVIDE 748
PFI+EFNYPM NCA G++GV VNGRELHQ+D +LL GRGLPRISGKSYSVEI+GN+ DE
Sbjct: 4 PFIREFNYPMASNCASGDSGVFVNGRELHQRDLDLLVGRGLPRISGKSYSVEISGNITDE 63
Query: 749 TTXXXXXXXXXXAPT 763
T APT
Sbjct: 64 ETGKKLRSLGKLAPT 78
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.130 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 27,872,129
Number of extensions: 1247572
Number of successful extensions: 2786
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2790
Number of HSP's successfully gapped: 5
Length of query: 780
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 671
Effective length of database: 11,344,475
Effective search space: 7612142725
Effective search space used: 7612142725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)