FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0586400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.35 (0.0464) R2 : 0.126
β1 : -1.08 (0.17) R2dD : 0.0799 R2D : 0.0679
β2 : 0.608 (0.12) R2dC : 0.0498 R2C : 0.0453
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.204 (0.099) R2dN8 : 0.0109 R2N8 : -0.00251
σ : 0.872
deviance : 346.72
__
_____
C
peak time of C : 7.33
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
328.91 0.852 3.38 -1.14 0.603 0.666 -1.39 -0.651 -0.315 8.07 41.72 1383 -- --
329.47 0.845 3.38 -1.07 0.601 0.665 -1.37 -- -0.296 8.06 43.18 1381 -- --
334.51 0.852 3.37 -1.18 0.61 0.662 -- -0.611 -0.311 7.69 42.05 1383 -- --
334.99 0.852 3.37 -1.1 0.615 0.664 -- -- -0.288 7.68 43.8 1383 -- --
353.73 0.876 3.39 -1.15 -- 0.673 -- -0.742 -0.294 -- 50 1396 -- --
341.55 0.866 3.35 -1.04 0.595 -- -1.39 -- -0.203 7.84 -- -- -- --
346.72 0.872 3.35 -1.08 0.608 -- -- -- -0.204 7.33 -- -- -- --
354.5 0.877 3.37 -1.04 -- 0.688 -- -- -0.224 -- 50 1395 -- --
363.89 0.888 3.34 -- 0.635 0.889 -- -- -0.114 8.4 52.73 1395 -- --
366.35 0.894 3.36 -1.07 -- -- -- -- -0.193 -- -- -- -- --
377.23 0.909 3.32 -- 0.598 -- -- -- -0.0837 7.45 -- -- -- --
368.33 0.894 3.35 -- -- 1.49 -- -- -0.0233 -- 68.25 1479 -- --
396.3 0.929 3.34 -- -- -- -- -- -0.0752 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 318.72 temperature 30 4320 > th dose dependent rect. 18 1
15 320.96 humidity 50 4320 < th dose dependent rect. 16 1
16 321.02 humidity 50 1440 < th dose independent rect. 16 1
19 322.13 temperature 30 720 > th dose dependent rect. 18 1
49 323.52 humidity 50 1440 > th dose independent rect. 16 1
51 324.69 wind 1 90 < th dose independent rect. 4 1
52 325.15 wind 1 90 < th dose dependent rect. 4 1
53 325.53 radiation 20 1440 > th dose independent rect. 16 15
54 325.87 radiation 10 1440 > th dose dependent rect. 16 1
55 326.14 radiation 20 1440 > th dose independent rect. 16 1
69 326.26 temperature 30 4320 < th dose independent rect. 18 6
70 326.26 humidity 70 720 < th dose dependent rect. 18 2
81 326.33 humidity 60 4320 < th dose independent rect. 18 2
95 326.39 humidity 60 4320 > th dose independent rect. 18 2
99 326.50 humidity 60 4320 < th dose dependent rect. 18 2
113 326.51 humidity 60 4320 > th dose independent rect. 18 5
117 326.55 radiation 10 1440 > th dose dependent rect. 16 14
131 326.58 humidity 60 4320 > th dose independent rect. 18 9
133 326.60 humidity 60 4320 > th dose independent rect. 18 11
134 326.61 temperature 30 4320 > th dose independent rect. 18 1
149 326.62 humidity 60 4320 > th dose independent rect. 18 14
152 326.68 humidity 70 720 < th dose independent rect. 19 1
165 326.71 humidity 70 720 < th dose independent rect. 19 13
166 326.71 humidity 90 90 > th dose dependent rect. 3 2
169 326.83 temperature 30 4320 < th dose independent rect. 18 1
226 327.17 radiation 40 1440 < th dose dependent rect. 16 1
227 327.25 temperature 30 4320 < th dose independent rect. 18 11
229 327.31 humidity 50 4320 < th dose independent rect. 16 18
231 327.31 humidity 50 4320 < th dose dependent rect. 16 19
232 327.33 radiation 20 1440 > th dose independent rect. 15 17
258 327.37 temperature 30 720 > th dose independent rect. 18 1
274 327.39 temperature 30 4320 < th dose independent rect. 18 8
293 327.43 wind 1 10 < th dose independent rect. 4 2
295 327.50 temperature 25 720 > th dose dependent rect. 20 2
312 327.57 wind 1 10 < th dose independent rect. 4 5
313 327.59 radiation 20 1440 < th dose independent rect. 16 1
341 327.76 radiation 40 1440 < th dose independent rect. 11 1
375 327.86 temperature 25 10 < th dose independent rect. 4 4
395 327.91 humidity 50 4320 > th dose independent rect. 16 18
413 327.99 humidity 50 4320 > th dose independent rect. 16 4
416 328.00 humidity 50 4320 > th dose independent rect. 16 8
443 328.04 radiation 40 1440 > th dose dependent rect. 11 5
464 328.08 atmosphere 995 4320 > th dose independent rect. 5 1
465 328.09 humidity 50 4320 < th dose independent sin 11 NA
467 328.09 radiation 40 1440 > th dose dependent rect. 11 3
478 328.12 humidity 50 4320 > th dose independent rect. 15 12
484 328.13 humidity 50 4320 > th dose independent rect. 15 14
489 328.15 radiation 30 1440 > th dose independent rect. 11 1
490 328.15 radiation 20 1440 < th dose independent rect. 16 4
498 328.17 radiation 40 1440 > th dose independent rect. 10 6
516 328.18 radiation 20 1440 < th dose independent rect. 16 11
523 328.21 radiation 20 1440 < th dose independent rect. 16 9
536 328.30 radiation 40 1440 > th dose dependent rect. 13 3
597 328.34 radiation 20 1440 > th dose dependent rect. 11 1
598 328.34 radiation 40 1440 > th dose dependent rect. 13 1
601 328.37 radiation 1 720 > th dose independent rect. 18 1
614 328.39 radiation 40 1440 > th dose dependent sin 15 NA
626 328.46 temperature 25 270 < th dose independent rect. 18 7
629 328.47 temperature 15 90 > th dose dependent rect. 4 1
638 328.55 temperature 20 90 > th dose independent rect. 4 1
664 328.64 radiation 40 1440 > th dose independent sin 16 NA
692 328.68 radiation 40 1440 > th dose independent rect. 13 3
715 328.70 radiation 20 1440 < th dose independent rect. 15 17
725 328.76 humidity 50 4320 > th dose independent sin 12 NA
772 328.89 wind 1 10 > th dose independent rect. 9 22
827 328.94 radiation 20 1440 < th dose independent rect. 13 19
867 329.01 radiation 20 1440 > th dose independent sin 13 NA
878 329.04 radiation 30 4320 < th dose independent rect. 6 2
880 329.04 radiation 10 1440 > th dose dependent rect. 13 19
882 329.05 humidity 90 4320 > th dose dependent rect. 3 2
932 329.14 radiation 40 1440 < th dose dependent rect. 16 14
943 329.17 radiation 20 1440 < th dose independent rect. 13 4
945 329.18 wind 7 1440 < th dose independent rect. 5 1
947 329.18 temperature 10 1440 > th dose independent rect. 5 1
950 329.18 temperature 30 1440 < th dose independent rect. 5 1
954 329.18 humidity 50 1440 > th dose independent rect. 5 1
964 329.18 atmosphere 1015 1440 < th dose independent rect. 5 1
975 329.18 temperature 10 1440 > th dose independent rect. 6 23
980 329.19 radiation 40 1440 > th dose independent rect. 13 23