BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0586400 Os05g0586400|AK068482
(780 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G46380.1 | chr2:19039377-19042171 FORWARD LENGTH=769 204 2e-52
AT3G61670.1 | chr3:22819052-22821870 FORWARD LENGTH=791 203 3e-52
AT4G01090.1 | chr4:470834-473248 REVERSE LENGTH=715 186 5e-47
AT1G01440.1 | chr1:159935-162219 REVERSE LENGTH=665 181 2e-45
AT3G56410.2 | chr3:20916320-20921134 REVERSE LENGTH=1536 55 1e-07
AT2G23460.1 | chr2:9995699-9998945 FORWARD LENGTH=889 55 2e-07
AT5G05190.1 | chr5:1541853-1543875 FORWARD LENGTH=616 54 3e-07
AT4G34390.1 | chr4:16441579-16444840 FORWARD LENGTH=862 54 3e-07
>AT2G46380.1 | chr2:19039377-19042171 FORWARD LENGTH=769
Length = 768
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 89/137 (64%), Positives = 106/137 (77%)
Query: 640 VSINGHSISERVLRKAEKKSGPVGPGSYWYDYRAGFWGVMGHECSGIIPPFIKEFNYPMP 699
VSINGH ++ER+++ AEK++GP+ PG+YWYDYRAGFWGV+G C GI+PPFI+E NYPMP
Sbjct: 628 VSINGHPVAERLVKMAEKQAGPIRPGNYWYDYRAGFWGVLGSHCLGILPPFIEELNYPMP 687
Query: 700 KNCAGGNTGVIVNGRELHQKDFELLAGRGLPRISGKSYSVEINGNVIDETTXXXXXXXXX 759
+NCAGG T V VNGRELHQKD LL RGLPR +SY+V I+G VIDE T
Sbjct: 688 ENCAGGTTRVFVNGRELHQKDLRLLTARGLPRDRDRSYTVYISGRVIDEDTGEELDSLGK 747
Query: 760 XAPTVEKLKRGFGMHVP 776
APTV+KLKRGFGM VP
Sbjct: 748 LAPTVDKLKRGFGMRVP 764
>AT3G61670.1 | chr3:22819052-22821870 FORWARD LENGTH=791
Length = 790
Score = 203 bits (517), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 102/201 (50%), Positives = 133/201 (66%), Gaps = 7/201 (3%)
Query: 577 MPSKLESSVNERTNSSSRVSSEAELDEVQSAATKNGDSXXXXXXXXXXXXDISLFNQSVD 636
+ S++E + N+ ++ +S VS + Q A K+G + I N +
Sbjct: 594 LASEMEVNFNDYSHRNSGVSKDQ-----QQRAKKSGFASIVKKSFKDLTKSIQ--NDEGN 646
Query: 637 SAKVSINGHSISERVLRKAEKKSGPVGPGSYWYDYRAGFWGVMGHECSGIIPPFIKEFNY 696
+ VSINGH ++ER+LRKAEK++G + PG+YWYDYRAGFWGVMG GI+PPFI+E NY
Sbjct: 647 KSNVSINGHPLTERLLRKAEKQAGVIQPGNYWYDYRAGFWGVMGGPGLGILPPFIEELNY 706
Query: 697 PMPKNCAGGNTGVIVNGRELHQKDFELLAGRGLPRISGKSYSVEINGNVIDETTXXXXXX 756
PMP+NC+GG TGV VNGRELH+KD +LLAGRGLP +SY V+I G VIDE T
Sbjct: 707 PMPENCSGGTTGVFVNGRELHRKDLDLLAGRGLPPDRDRSYIVDITGRVIDEDTGEELDC 766
Query: 757 XXXXAPTVEKLKRGFGMHVPE 777
APT+EKLKRGFGM +P+
Sbjct: 767 LGKLAPTIEKLKRGFGMRLPK 787
>AT4G01090.1 | chr4:470834-473248 REVERSE LENGTH=715
Length = 714
Score = 186 bits (472), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 82/142 (57%), Positives = 103/142 (72%)
Query: 635 VDSAKVSINGHSISERVLRKAEKKSGPVGPGSYWYDYRAGFWGVMGHECSGIIPPFIKEF 694
+ S +V +NGH I E ++ AEK +GP+ G YWYDYRAGFWGVMG C GIIPPFI+EF
Sbjct: 568 MKSLEVWVNGHLIPEDLVSSAEKLAGPIQAGKYWYDYRAGFWGVMGKPCLGIIPPFIEEF 627
Query: 695 NYPMPKNCAGGNTGVIVNGRELHQKDFELLAGRGLPRISGKSYSVEINGNVIDETTXXXX 754
++PM NCA GNT V VNGRELH++DFELL GRGLPR +SY V+I+G ++D+ +
Sbjct: 628 SHPMLDNCAAGNTDVFVNGRELHKRDFELLVGRGLPRDKNRSYIVDISGRILDQDSGEEL 687
Query: 755 XXXXXXAPTVEKLKRGFGMHVP 776
APT+EK+K GFGM VP
Sbjct: 688 HSLGKLAPTIEKVKHGFGMRVP 709
>AT1G01440.1 | chr1:159935-162219 REVERSE LENGTH=665
Length = 664
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 82/150 (54%), Positives = 106/150 (70%)
Query: 627 DISLFNQSVDSAKVSINGHSISERVLRKAEKKSGPVGPGSYWYDYRAGFWGVMGHECSGI 686
+IS +Q+ + +V +NG+ I E ++ AEK++GPV G YWYDYRAGFWGVMG+ C GI
Sbjct: 510 NISSNDQNNEQLEVWVNGYLIPEDLVISAEKQAGPVQAGKYWYDYRAGFWGVMGNPCLGI 569
Query: 687 IPPFIKEFNYPMPKNCAGGNTGVIVNGRELHQKDFELLAGRGLPRISGKSYSVEINGNVI 746
IPPFI+EF+ PMP NC GNT V VNGRELH++D ELL+ RGLPR +SY ++I G V+
Sbjct: 570 IPPFIEEFSRPMPDNCGAGNTSVFVNGRELHERDLELLSSRGLPRGKNRSYIIDIAGRVL 629
Query: 747 DETTXXXXXXXXXXAPTVEKLKRGFGMHVP 776
D + APTV+K+K GFGM VP
Sbjct: 630 DGDSGEELKSLGRLAPTVDKVKHGFGMRVP 659
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 230 CRPVRGAAPFVVCSSCNQLLQLPPGKCTAR-KQIQVRCGSCSEIVSFKLKEVKI 282
C P+ G APF+ C SC +LL +P K + +Q +++CG+CSE+++F++ + K+
Sbjct: 271 CHPLAGGAPFIACHSCFELLYVPKKKLLGQERQQKMQCGACSEVITFRVVDKKL 324
>AT3G56410.2 | chr3:20916320-20921134 REVERSE LENGTH=1536
Length = 1535
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 213 SVSKRRTEFFRKKAESFCR---PVRGAAPFVVCSSCNQLLQLPPGKCTARKQ-IQVRCGS 268
S+ + + + R++ R P G APF CS C +LLQLP ++Q QVRCGS
Sbjct: 353 SILRNKKRYVRERNPVVKRHILPSAGGAPFATCSYCLELLQLPQVSPQGKRQRYQVRCGS 412
Query: 269 CSEIVSFKLKEVKIHPLVAPT 289
CS ++ F ++E L +P+
Sbjct: 413 CSGVLKFSIREKADTVLDSPS 433
>AT2G23460.1 | chr2:9995699-9998945 FORWARD LENGTH=889
Length = 888
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 640 VSINGHSISERVLRKAEKKSGP---VGPGSYWYDYRAGFWGVMGHECSGIIPPFIKEFNY 696
V +NG + L + S P + PG YWYD +G WG G + II P +
Sbjct: 317 VYVNGQPLYPEELVTLQTCSNPPKKLKPGDYWYDKVSGLWGKEGEKPYQIISPHLN-VGG 375
Query: 697 PMPKNCAGGNTGVIVNGRELHQKDFELLAGRGL 729
P+ + GNT V +NGRE+ + + +L G+
Sbjct: 376 PISPEASNGNTQVFINGREITKVELRMLQLAGV 408
>AT5G05190.1 | chr5:1541853-1543875 FORWARD LENGTH=616
Length = 615
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 211 HFSVSKRRTEFFRKKAESFCRPVRGAAPFVVCSSCNQLLQLPPGKCT-ARKQIQVRCGSC 269
H + RR ++ A+ RP G APFV C SC++ LQLP RK +RCG+C
Sbjct: 471 HHELQTRRLRERQRVAKRHVRPTAGGAPFVSCYSCSENLQLPVDFLIFKRKHHLLRCGTC 530
Query: 270 SEIVSFKLK 278
+ ++ F L+
Sbjct: 531 TTVLRFSLQ 539
>AT4G34390.1 | chr4:16441579-16444840 FORWARD LENGTH=862
Length = 861
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 640 VSINGHSISERVLRKAEKKSGP---VGPGSYWYDYRAGFWGVMGHECSGIIPPFIKEFNY 696
+ +N +SE L + P + PG YWYD AG+WG +G + S II P Y
Sbjct: 306 IIVNDKPLSEDELYTLQTCPNPPKKLKPGHYWYDKVAGYWGKIGEKPSQIISPNNSIGGY 365
Query: 697 PMPKNCAGGNTGVIVNGRELHQKDFELLAGRGL 729
+ + + G+T + +NGRE+ + + +L G+
Sbjct: 366 -ISEKVSNGDTEIYINGREITKPELTMLKWAGV 397
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.130 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 17,720,625
Number of extensions: 788674
Number of successful extensions: 2082
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2079
Number of HSP's successfully gapped: 11
Length of query: 780
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 674
Effective length of database: 8,200,473
Effective search space: 5527118802
Effective search space used: 5527118802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 116 (49.3 bits)