Os01g0621300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0621300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 115.3 | 0.505 | 10.3 | 0.17 | 1.36 | -1.03 | 1.4 | -0.385 | -0.644 | 4.93 | 21.12 | 1004 | -- | -- |
| 115.35 | 0.5 | 10.3 | 0.244 | 1.36 | -0.977 | 1.41 | -- | -0.619 | 4.95 | 21.3 | 1020 | -- | -- |
| 120.13 | 0.51 | 10.3 | 0.179 | 1.36 | -1.03 | -- | -0.318 | -0.64 | 4.88 | 21.29 | 1001 | -- | -- |
| 120.36 | 0.511 | 10.3 | 0.262 | 1.37 | -1.01 | -- | -- | -0.624 | 4.89 | 21.3 | 1010 | -- | -- |
| 208.35 | 0.672 | 10.4 | 0.142 | -- | -0.987 | -- | -0.424 | -0.632 | -- | 21.3 | 602 | -- | -- |
| 145.84 | 0.566 | 10.4 | -0.143 | 1.34 | -- | 1.61 | -- | -0.889 | 5.31 | -- | -- | -- | -- |
| 152.27 | 0.578 | 10.4 | -0.141 | 1.35 | -- | -- | -- | -0.897 | 5.29 | -- | -- | -- | -- |
| 209.74 | 0.675 | 10.4 | 0.242 | -- | -0.972 | -- | -- | -0.603 | -- | 21.3 | 521 | -- | -- |
| 121.9 | 0.514 | 10.4 | -- | 1.37 | -0.951 | -- | -- | -0.644 | 4.86 | 21.3 | 1011 | -- | -- |
| 247.58 | 0.735 | 10.4 | -0.0943 | -- | -- | -- | -- | -0.863 | -- | -- | -- | -- | -- |
| 152.8 | 0.578 | 10.4 | -- | 1.35 | -- | -- | -- | -0.881 | 5.29 | -- | -- | -- | -- |
| 211.15 | 0.677 | 10.4 | -- | -- | -0.922 | -- | -- | -0.64 | -- | 21.28 | 512 | -- | -- |
| 247.81 | 0.735 | 10.4 | -- | -- | -- | -- | -- | -0.853 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 111.08 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 4 | 111.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 12 | 111.85 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 7 |
| 14 | 111.96 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 9 |
| 42 | 112.94 | temperature | 25 | 720 | < th | dose dependent | sin | 5 | NA |
| 68 | 113.72 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 76 | 113.95 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 100 | 114.55 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 112 | 114.80 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 7 |
| 173 | 115.75 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 174 | 115.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 227 | 116.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 399 | 117.63 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 420 | 117.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 532 | 118.52 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 616 | 119.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 621 | 119.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 839 | 120.24 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 4 |
| 855 | 120.31 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 862 | 120.35 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 2 |