Os02g0258300 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0258300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, FYVE/PHD-type domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.42	(0.0304)	R²	:	0.271
β₁	:	-1.15	(0.111)	R²_dD	:	0.178	R²_D	:	0.141
β₂	:	0.618	(0.0794)	R²_dC	:	0.0976	R²_C	:	0.0816
β₃	:	--	(--)	R²_dE	:	--	R²_E	:	--
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.277	(0.0649)	R²_dN8	:	0.0392	R²_N8	:	-0.000689
σ	:	0.571
deviance	:	148.84
__

_____

C
peak time of C	:	6.04
E
wheather	:	--
threshold	:	--
memory length	:	--
response mode	:	--
dose dependency	:	--
G
type of G	:	--
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
136.74	0.549	3.36	-1.52	0.572	0.424	-1.68	2.04	-0.176	5.96	89.79	4818	--	--
139.61	0.55	3.38	-1.22	0.576	0.491	-1.46	--	-0.145	5.8	92.98	3464	--	--
142.65	0.556	3.37	-1.51	0.611	0.393	--	2.08	-0.203	5.82	89.77	5434	--	--
145.2	0.561	3.38	-1.24	0.572	0.494	--	--	-0.126	5.9	93	3497	--	--
159.47	0.588	3.35	-1.52	--	0.61	--	1.87	-0.0835	--	89.14	4849	--	--
143.92	0.562	3.42	-1.14	0.626	--	-1.42	--	-0.283	5.96	--	--	--	--
148.84	0.571	3.42	-1.15	0.618	--	--	--	-0.277	6.04	--	--	--	--
160.75	0.591	3.38	-1.28	--	0.757	--	--	-0.0598	--	91.87	3380	--	--
180.26	0.625	3.37	--	0.585	0.489	--	--	-0.0981	6	95.5	3485	--	--
168.64	0.607	3.43	-1.13	--	--	--	--	-0.263	--	--	--	--	--
183.84	0.634	3.39	--	0.601	--	--	--	-0.149	6.14	--	--	--	--
195.35	0.651	3.37	--	--	0.555	--	--	-0.0203	--	95.08	7858	--	--
202.59	0.664	3.4	--	--	--	--	--	-0.137	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	133.35	humidity	80.0	4320	> th	dose dependent	rect.	12	1
3	135.20	wind	3.0	10	< th	dose dependent	rect.	12	1
5	135.39	humidity	90.0	4320	< th	dose independent	rect.	23	14
10	135.46	humidity	80.0	4320	> th	dose independent	rect.	12	1
11	135.58	wind	3.0	4320	> th	dose independent	rect.	5	2
12	135.61	humidity	90.0	4320	> th	dose independent	rect.	24	17
16	135.69	humidity	80.0	4320	< th	dose independent	rect.	12	1
20	135.74	humidity	90.0	4320	< th	dose independent	rect.	23	17
39	135.94	humidity	90.0	4320	> th	dose independent	rect.	23	13
41	135.95	temperature	20.0	1440	> th	dose independent	rect.	9	6
50	136.03	wind	3.0	4320	< th	dose independent	rect.	5	2
54	136.10	wind	3.0	4320	> th	dose dependent	rect.	6	1
57	136.11	humidity	70.0	30	> th	dose independent	rect.	19	23
87	136.26	humidity	90.0	4320	> th	dose dependent	rect.	2	15
88	136.27	temperature	20.0	1440	> th	dose independent	rect.	11	4
94	136.30	humidity	90.0	4320	< th	dose independent	sin	5	NA
95	136.30	humidity	90.0	4320	> th	dose independent	rect.	24	5
97	136.31	wind	3.0	4320	> th	dose independent	rect.	1	9
99	136.34	temperature	20.0	1440	< th	dose independent	rect.	12	2
103	136.35	temperature	20.0	720	< th	dose dependent	rect.	7	11
104	136.36	humidity	90.0	4320	> th	dose independent	sin	4	NA
133	136.46	wind	3.0	4320	> th	dose independent	rect.	4	5
138	136.46	temperature	20.0	1440	< th	dose dependent	rect.	12	1
156	136.51	temperature	20.0	1440	< th	dose independent	rect.	9	6
161	136.51	humidity	60.0	1440	> th	dose dependent	rect.	1	12
172	136.54	wind	7.0	4320	< th	dose dependent	rect.	6	1
193	136.62	wind	3.0	4320	< th	dose independent	rect.	1	9
205	136.66	wind	3.0	4320	< th	dose independent	rect.	4	5
223	136.73	temperature	20.0	1440	< th	dose independent	rect.	8	10
252	136.79	humidity	90.0	4320	> th	dose dependent	rect.	2	3
255	136.79	radiation	40.0	30	< th	dose dependent	rect.	19	23
287	136.86	wind	3.0	4320	> th	dose dependent	rect.	1	7
311	136.91	temperature	20.0	720	< th	dose dependent	rect.	7	5
324	136.94	humidity	60.0	1440	> th	dose dependent	sin	5	NA
331	136.96	humidity	90.0	4320	> th	dose independent	rect.	3	4
365	137.01	temperature	20.0	1440	< th	dose independent	rect.	17	1
372	137.03	wind	9.0	43200	> th	dose dependent	rect.	4	1
382	137.05	temperature	20.0	1440	> th	dose independent	rect.	17	1
429	137.14	humidity	70.0	30	> th	dose independent	rect.	18	1
470	137.22	humidity	90.0	4320	> th	dose dependent	rect.	2	11
482	137.24	humidity	50.0	10	> th	dose independent	rect.	19	23
516	137.30	temperature	30.0	30	< th	dose independent	rect.	18	1
517	137.30	precipitation	0.1	43200	< th	dose independent	rect.	22	2
518	137.30	humidity	70.0	30	> th	dose independent	rect.	6	9
520	137.30	precipitation	0.1	43200	< th	dose dependent	rect.	22	2
527	137.31	humidity	70.0	30	> th	dose independent	rect.	19	19
534	137.32	humidity	90.0	4320	> th	dose dependent	sin	3	NA
541	137.33	humidity	70.0	30	> th	dose dependent	rect.	18	1
560	137.37	precipitation	0.1	43200	> th	dose independent	rect.	22	2
564	137.37	precipitation	0.1	43200	> th	dose dependent	rect.	22	2
569	137.38	wind	3.0	10	< th	dose independent	rect.	12	1
574	137.38	atmosphere	1005.0	30	> th	dose dependent	rect.	18	1
586	137.42	humidity	90.0	720	< th	dose independent	rect.	1	1
619	137.47	humidity	70.0	30	> th	dose independent	rect.	6	12
633	137.50	wind	9.0	43200	> th	dose independent	rect.	15	6
650	137.52	humidity	90.0	1440	< th	dose dependent	rect.	1	11
653	137.53	humidity	80.0	43200	< th	dose independent	rect.	9	1
664	137.55	humidity	90.0	1440	< th	dose dependent	sin	7	NA
667	137.56	humidity	90.0	4320	< th	dose independent	rect.	9	4
672	137.56	temperature	20.0	1440	< th	dose dependent	rect.	19	1
689	137.58	radiation	30.0	30	< th	dose independent	rect.	19	23
696	137.59	wind	9.0	43200	> th	dose independent	rect.	17	2
702	137.59	humidity	50.0	90	> th	dose dependent	rect.	6	11
706	137.59	humidity	90.0	720	< th	dose dependent	rect.	20	16
712	137.61	humidity	50.0	10	> th	dose dependent	rect.	6	12
722	137.63	humidity	80.0	720	< th	dose independent	sin	7	NA
723	137.63	wind	9.0	43200	> th	dose independent	rect.	15	13
725	137.63	temperature	20.0	1440	< th	dose dependent	rect.	17	1
735	137.64	humidity	90.0	720	< th	dose dependent	rect.	18	18
738	137.65	humidity	80.0	43200	< th	dose independent	rect.	8	3
742	137.65	temperature	20.0	1440	< th	dose dependent	rect.	11	9
752	137.66	temperature	20.0	720	< th	dose dependent	rect.	24	1
755	137.66	wind	9.0	43200	> th	dose dependent	rect.	15	5
762	137.67	temperature	20.0	1440	< th	dose dependent	rect.	15	5
764	137.67	wind	3.0	43200	> th	dose dependent	rect.	16	11
767	137.68	humidity	70.0	30	> th	dose independent	rect.	6	22
771	137.68	humidity	50.0	10	> th	dose dependent	rect.	6	8
773	137.68	radiation	30.0	90	< th	dose dependent	rect.	6	9
774	137.69	atmosphere	1005.0	43200	< th	dose independent	rect.	7	1
786	137.70	atmosphere	1000.0	30	> th	dose independent	rect.	19	23
793	137.71	wind	9.0	43200	> th	dose independent	rect.	15	9
803	137.73	atmosphere	1005.0	43200	> th	dose independent	rect.	7	1
813	137.74	humidity	80.0	43200	> th	dose independent	rect.	9	1
815	137.74	wind	9.0	43200	< th	dose independent	rect.	15	6
825	137.75	wind	9.0	43200	< th	dose independent	rect.	17	2
840	137.76	humidity	80.0	14400	< th	dose independent	rect.	7	1
841	137.76	precipitation	0.1	4320	> th	dose independent	rect.	9	2
845	137.76	temperature	30.0	30	< th	dose dependent	rect.	18	1
846	137.76	precipitation	0.1	4320	> th	dose dependent	rect.	9	2
856	137.77	humidity	90.0	4320	> th	dose dependent	rect.	2	7
867	137.78	wind	7.0	43200	> th	dose dependent	rect.	17	2
876	137.79	humidity	50.0	10	> th	dose dependent	rect.	6	10
904	137.82	radiation	10.0	43200	< th	dose dependent	rect.	7	4
912	137.83	wind	5.0	43200	< th	dose independent	rect.	16	11
929	137.84	wind	3.0	43200	> th	dose dependent	rect.	17	7
934	137.85	radiation	40.0	43200	> th	dose independent	rect.	14	1
941	137.85	wind	1.0	43200	< th	dose dependent	rect.	8	8
945	137.85	radiation	20.0	90	< th	dose dependent	rect.	6	11
960	137.87	wind	5.0	43200	> th	dose independent	rect.	16	11
976	137.88	humidity	80.0	720	< th	dose independent	rect.	22	13