BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0258300 Os02g0258300|AK073995
(842 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0258300 Zinc finger, FYVE/PHD-type domain containing p... 1558 0.0
Os06g0524300 Hypothetical protein 862 0.0
Os05g0586400 Conserved hypothetical protein 228 2e-59
Os01g0621300 Conserved hypothetical protein 111 2e-24
>Os02g0258300 Zinc finger, FYVE/PHD-type domain containing protein
Length = 842
Score = 1558 bits (4034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 760/842 (90%), Positives = 760/842 (90%)
Query: 1 MEALGDMEGEEGXXXXXXXXXXXCPKCEKFLPELPNYSVYVCGGCGATLQXXXXXXXXXX 60
MEALGDMEGEEG CPKCEKFLPELPNYSVYVCGGCGATLQ
Sbjct: 1 MEALGDMEGEEGQRRQQQIRVVRCPKCEKFLPELPNYSVYVCGGCGATLQAKKNSASENS 60
Query: 61 XXXXDGGHVKYLEVLESSPDNKGAASKDTCXXXXXXXXXXXXXXXXXRQVLLDRMAACDD 120
DGGHVKYLEVLESSPDNKGAASKDTC RQVLLDRMAACDD
Sbjct: 61 SEKSDGGHVKYLEVLESSPDNKGAASKDTCEAAQEGEAKNGEAKAEERQVLLDRMAACDD 120
Query: 121 SRIPREPNALKLEASLRDDSREIREAKYRRIRSEDKGEAKHTVRARDRSPRSVVDAIPPN 180
SRIPREPNALKLEASLRDDSREIREAKYRRIRSEDKGEAKHTVRARDRSPRSVVDAIPPN
Sbjct: 121 SRIPREPNALKLEASLRDDSREIREAKYRRIRSEDKGEAKHTVRARDRSPRSVVDAIPPN 180
Query: 181 AYPAEGPSDYHIKSRFRHTNGEQADMRNLEGLNRVNGLEKDRADLLRMLDELRDQVQRSC 240
AYPAEGPSDYHIKSRFRHTNGEQADMRNLEGLNRVNGLEKDRADLLRMLDELRDQVQRSC
Sbjct: 181 AYPAEGPSDYHIKSRFRHTNGEQADMRNLEGLNRVNGLEKDRADLLRMLDELRDQVQRSC 240
Query: 241 EITNKPSGSTSTDKAVDASGLYNPRERLSRLRHGSPQLQRSGSQQSPSLNGQAPCIPQAY 300
EITNKPSGSTSTDKAVDASGLYNPRERLSRLRHGSPQLQRSGSQQSPSLNGQAPCIPQAY
Sbjct: 241 EITNKPSGSTSTDKAVDASGLYNPRERLSRLRHGSPQLQRSGSQQSPSLNGQAPCIPQAY 300
Query: 301 APGTAQQDLHGYGEPMAHMGAPSYPVGTYPWRNFDNYFYGQYDPDPLISYHHDGFYHQPA 360
APGTAQQDLHGYGEPMAHMGAPSYPVGTYPWRNFDNYFYGQYDPDPLISYHHDGFYHQPA
Sbjct: 301 APGTAQQDLHGYGEPMAHMGAPSYPVGTYPWRNFDNYFYGQYDPDPLISYHHDGFYHQPA 360
Query: 361 CSCLHCYHREFLPVQGPPLGFNHRRVPPYVMNNPRVYPVDGPAMFGTQNYNSRVNASMQR 420
CSCLHCYHREFLPVQGPPLGFNHRRVPPYVMNNPRVYPVDGPAMFGTQNYNSRVNASMQR
Sbjct: 361 CSCLHCYHREFLPVQGPPLGFNHRRVPPYVMNNPRVYPVDGPAMFGTQNYNSRVNASMQR 420
Query: 421 NHMRAAMSKKPAQTCEPIACGAPFTICYNCYEVLQLPKKSPVPGKDEYKLRCGSCSHALV 480
NHMRAAMSKKPAQTCEPIACGAPFTICYNCYEVLQLPKKSPVPGKDEYKLRCGSCSHALV
Sbjct: 421 NHMRAAMSKKPAQTCEPIACGAPFTICYNCYEVLQLPKKSPVPGKDEYKLRCGSCSHALV 480
Query: 481 VKLDGSRLDVXXXXXXXXXXXXXXXXXNDGQGSNANSAPHERVLPLYSFSAASHGSQDLP 540
VKLDGSRLDV NDGQGSNANSAPHERVLPLYSFSAASHGSQDLP
Sbjct: 481 VKLDGSRLDVSAPSPISHISGGSKISSNDGQGSNANSAPHERVLPLYSFSAASHGSQDLP 540
Query: 541 SNSSEAEKMQGXXXXXXXXEDENSPARSNSQRDTPGSRDLHPEAEVSTRVPSLHLRDHFG 600
SNSSEAEKMQG EDENSPARSNSQRDTPGSRDLHPEAEVSTRVPSLHLRDHFG
Sbjct: 541 SNSSEAEKMQGISSSCSISEDENSPARSNSQRDTPGSRDLHPEAEVSTRVPSLHLRDHFG 600
Query: 601 YSPSEKVVDGSGKGSRSTRSEHEKAVLTESFKQNTVKDVSVVNIMXXXXXXXXXXXXXXX 660
YSPSEKVVDGSGKGSRSTRSEHEKAVLTESFKQNTVKDVSVVNIM
Sbjct: 601 YSPSEKVVDGSGKGSRSTRSEHEKAVLTESFKQNTVKDVSVVNIMDLSDDEYDDPDYMQD 660
Query: 661 RGDVAQPVDHPRAVKTGDSFFTNLIKKSFKINNGMGNGRAKVFINGYPISDRAVRKAEKI 720
RGDVAQPVDHPRAVKTGDSFFTNLIKKSFKINNGMGNGRAKVFINGYPISDRAVRKAEKI
Sbjct: 661 RGDVAQPVDHPRAVKTGDSFFTNLIKKSFKINNGMGNGRAKVFINGYPISDRAVRKAEKI 720
Query: 721 AGPIYPGEYWYDYRAGFWGVMGQSCLGMIPPYIPELNYPMPKKCAAGNTGVFVNGRELHQ 780
AGPIYPGEYWYDYRAGFWGVMGQSCLGMIPPYIPELNYPMPKKCAAGNTGVFVNGRELHQ
Sbjct: 721 AGPIYPGEYWYDYRAGFWGVMGQSCLGMIPPYIPELNYPMPKKCAAGNTGVFVNGRELHQ 780
Query: 781 KDLDLLVGRGLPDSPGRSYRVEMSGKVSDEVSGEELYCLGKLAPTVEKMKRGFGMRVPRI 840
KDLDLLVGRGLPDSPGRSYRVEMSGKVSDEVSGEELYCLGKLAPTVEKMKRGFGMRVPRI
Sbjct: 781 KDLDLLVGRGLPDSPGRSYRVEMSGKVSDEVSGEELYCLGKLAPTVEKMKRGFGMRVPRI 840
Query: 841 IP 842
IP
Sbjct: 841 IP 842
>Os06g0524300 Hypothetical protein
Length = 811
Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/854 (54%), Positives = 573/854 (67%), Gaps = 63/854 (7%)
Query: 7 MEGEEGXXXXXXXXXXXCPKCEKFLPELPNYSVYVCGGCGATLQXXXXXXXXXXXXXXDG 66
MEG+EG CPKC+KFLPELP YSVYVCGGCGA LQ D
Sbjct: 1 MEGDEGAAAAARIRLVRCPKCDKFLPELPAYSVYVCGGCGAALQ-AKKKYSAQGSDNSDN 59
Query: 67 GHVKYLEVLES---SPDNKGAASKDTCXXXXXXXXXXXXXXXXXRQVLLDRMAAC----- 118
GHVKYLEVLES +P+ A+ D + + +R++A
Sbjct: 60 GHVKYLEVLESVAEAPEAMDGATADG-------------------RSIPNRISALHSRSV 100
Query: 119 ---DDSRIPREPNALKLEASLRDDSREIREAKYRRIRSEDKGEAKHTVRAR---DRSPRS 172
+D+R+ R P+ EA++R+D REAKY RIR+ + + +VR R D SPRS
Sbjct: 101 YNHEDNRMARGPSTSTGEATIRNDG---REAKYMRIRNVENADMMKSVRGRGISDISPRS 157
Query: 173 VVDAIPPNAYPAEGPSDYHIKSRFRHTNGEQADMRNLEGLNRVNGLEKDRADLLRMLDEL 232
+D IPP +Y AE +Y ++S++R +N E A+ R+L+G +RV GLEKDRA+LL+MLDEL
Sbjct: 158 PIDGIPPTSYQAESLVNYQLQSKYRFSNREHANDRDLDGPSRVRGLEKDRAELLKMLDEL 217
Query: 233 RDQVQRSCEITNKPSGSTSTDKAVDASGLYNPRERLSRLRHGSPQLQRSGSQQSPSLNGQ 292
RDQVQ+SCE+T+ PS S +T++ DAS + ++ ++LRH L +GS SPSLN Q
Sbjct: 218 RDQVQQSCEVTDAPSRSATTNRPADASSSHGAHDQPNQLRHDPSVLHWNGSHHSPSLNVQ 277
Query: 293 APCIPQAYAPGTAQQDLHGYGEPMAHMGAPSYPVGT-YPWRNFDNYFYGQYDPDPLISYH 351
+P IPQ +AP +Q+LHGY EP+ H A SY G YP RN DN+F+G +DPDPL+S H
Sbjct: 278 SPNIPQVHAPLPTRQNLHGYAEPIPHARASSYHAGAGYPCRNVDNFFFGHHDPDPLLSCH 337
Query: 352 HDGFYHQPACSCLHCYHREFLPVQGPPLGFNHRRVPPYVMNNPRVYPVDGPAMFGTQNYN 411
H+G YHQP CSC +CYHREFLPVQG PLGF +R PY+MN+ YPV+GP ++G Q Y
Sbjct: 338 HEGLYHQPVCSCFNCYHREFLPVQGTPLGFTDQRA-PYLMNSYGAYPVEGP-LYGQQRYT 395
Query: 412 SR-VNASMQRNHMRAAMSKKPAQTCEPIACGAPFTICYNCYEVLQLPKKSPVPGKDEYKL 470
SR N S+QRNH+R + KKPAQTCEPIA GAPFTICYNCYEVL++P K + GK EYKL
Sbjct: 396 SRGTNTSLQRNHLRTNVRKKPAQTCEPIAGGAPFTICYNCYEVLRIPMKHSLLGK-EYKL 454
Query: 471 RCGSCSHALVVKLDGSRLDVXXXXXXXXXXXXXXXXXNDGQGSNANSAPHERVLPLYSFS 530
CGSCSHA++V LDGSRL+V D +N ++ ER+LP Y FS
Sbjct: 455 MCGSCSHAILVNLDGSRLNVSEPAPGINLSAALQNGIGDSMRNNGHANADERLLPQYCFS 514
Query: 531 AASHGSQ--DLPSNSSEAEKMQGXXXXXXXXEDENSPARSNSQRDTPGSRDLHPEAEVST 588
SH SQ DL SNSSE++ +++P ++S+ +TP SRDL EA V +
Sbjct: 515 NGSHESQEKDLESNSSESDS-------------KHTPLGTDSE-NTPQSRDLPSEANVIS 560
Query: 589 RVPSLHLRDHFGYSPSEKVVDGSGKGSRSTRSEHEKAVL-TESFKQNTVKDVSVVNIMXX 647
VPSL D G+SPSE SGKGSRST SEHEKA+L TES K+N++KDV V N
Sbjct: 561 HVPSLPHHDRCGFSPSED----SGKGSRSTHSEHEKAILFTESCKRNSIKDVCVANETQS 616
Query: 648 XXXXXXXXXXXXXRGDVAQPVDHPRAVKTGDSFFTNLIKKSFKINNGMGNGRAKVFINGY 707
++ Q V H R+ K GDSF TNLIK+SFK+NNG NGRA++F+NG+
Sbjct: 617 PVDEFDDTLYAQDMLNLPQNVGHTRSTKAGDSFLTNLIKRSFKMNNGTRNGRARIFVNGF 676
Query: 708 PISDRAVRKAEKIAGPIYPGEYWYDYRAGFWGVMGQSCLGMIPPYIPELNYPMPKKCAAG 767
PISDRAVRKAEK+AG I PG+YWYDYRAGFWGVMG+ CLGMIPPYIPE NYPMPK C G
Sbjct: 677 PISDRAVRKAEKLAGEICPGDYWYDYRAGFWGVMGRPCLGMIPPYIPEFNYPMPKNCGGG 736
Query: 768 NTGVFVNGRELHQKDLDLLVGRGLPDSPGRSYRVEMSGKVSDEVSGEELYCLGKLAPTVE 827
NTG+F+NGRELHQKDLDLLV RGL DSPGRSY VE SGKVSDEVSGEELY LGKLAPTVE
Sbjct: 737 NTGIFINGRELHQKDLDLLVSRGLSDSPGRSYIVENSGKVSDEVSGEELYGLGKLAPTVE 796
Query: 828 KMKRGFGMRVPRII 841
KM+RGFGMRVPRII
Sbjct: 797 KMRRGFGMRVPRII 810
>Os05g0586400 Conserved hypothetical protein
Length = 780
Score = 228 bits (581), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 109/171 (63%), Positives = 127/171 (74%), Gaps = 7/171 (4%)
Query: 673 AVKTGDS-FFTNLIKKSFK----INNGMGNGRAKVFINGYPISDRAVRKAEKIAGPIYPG 727
A K GDS FF +KK K N + + AKV ING+ IS+R +RKAEK +GP+ PG
Sbjct: 608 ATKNGDSKFFAGFLKKGLKDISLFNQSVDS--AKVSINGHSISERVLRKAEKKSGPVGPG 665
Query: 728 EYWYDYRAGFWGVMGQSCLGMIPPYIPELNYPMPKKCAAGNTGVFVNGRELHQKDLDLLV 787
YWYDYRAGFWGVMG C G+IPP+I E NYPMPK CA GNTGV VNGRELHQKD +LL
Sbjct: 666 SYWYDYRAGFWGVMGHECSGIIPPFIKEFNYPMPKNCAGGNTGVIVNGRELHQKDFELLA 725
Query: 788 GRGLPDSPGRSYRVEMSGKVSDEVSGEELYCLGKLAPTVEKMKRGFGMRVP 838
GRGLP G+SY VE++G V DE +G++L LGKLAPTVEK+KRGFGM VP
Sbjct: 726 GRGLPRISGKSYSVEINGNVIDETTGKKLRKLGKLAPTVEKLKRGFGMHVP 776
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 113/286 (39%), Gaps = 64/286 (22%)
Query: 217 GLEKDRADLLRMLDELRDQVQRSCEITNKPSGSTSTDKAVDASGLYNPRERLSRLRHGSP 276
L+++ +LLR LDELRD + RSCEIT++P R R+SR +
Sbjct: 37 ALKENPVELLRKLDELRDHITRSCEITDQP----------------RERHRMSRR---TA 77
Query: 277 QLQRSGSQQSPSLNGQAPCIPQAYA-----------PGTAQQDLHGYGEPMAHMGAPSYP 325
L+ S ++ P G P+ Y P + LH + PS
Sbjct: 78 SLRPSHAEPPPLGRG-----PEHYRSRYTGRYGSGFPHSPNDQLHRSMHRDRYERQPSGR 132
Query: 326 VGTYPWRNFDNYFYGQYDPDPLISYHHDGFYHQPACSCLHCYH--REFLPVQGPPLG--F 381
+P R ++N Y G +HQ C C C H R + + P+ F
Sbjct: 133 FRQWPERQWENSGY------------LGGNHHQSTCQCAQCLHGQRAVMQEEHIPMTRYF 180
Query: 382 NHRRVPPYVMNNPRVYPVDGPAMFGTQNYNSRVNASMQRNHMRAAMSKKPAQTCEPIACG 441
++ +P V + Y S + S +R KK C P+
Sbjct: 181 AGQQGSHLFDRSPSVSSELDRRSVASSLY-SHFSVSKRRTEF---FRKKAESFCRPVRGA 236
Query: 442 APFTICYNCYEVLQLPKKSPVPGK----DEYKLRCGSCSHALVVKL 483
APF +C +C ++LQLP PGK + ++RCGSCS + KL
Sbjct: 237 APFVVCSSCNQLLQLP-----PGKCTARKQIQVRCGSCSEIVSFKL 277
>Os01g0621300 Conserved hypothetical protein
Length = 78
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 62/75 (82%)
Query: 751 PYIPELNYPMPKKCAAGNTGVFVNGRELHQKDLDLLVGRGLPDSPGRSYRVEMSGKVSDE 810
P+I E NYPM CA+G++GVFVNGRELHQ+DLDLLVGRGLP G+SY VE+SG ++DE
Sbjct: 4 PFIREFNYPMASNCASGDSGVFVNGRELHQRDLDLLVGRGLPRISGKSYSVEISGNITDE 63
Query: 811 VSGEELYCLGKLAPT 825
+G++L LGKLAPT
Sbjct: 64 ETGKKLRSLGKLAPT 78
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 29,755,753
Number of extensions: 1336324
Number of successful extensions: 3058
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3044
Number of HSP's successfully gapped: 5
Length of query: 842
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 733
Effective length of database: 11,344,475
Effective search space: 8315500175
Effective search space used: 8315500175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)