BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0569400 Os05g0569400|AK100553
(195 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0569400 Aldose 1-epimerase family protein 404 e-113
Os01g0658700 Aldose 1-epimerase family protein 300 5e-82
AK070482 229 7e-61
Os04g0658000 Similar to Possible apospory-associated like p... 225 2e-59
Os02g0176900 Aldose 1-epimerase family protein 219 1e-57
Os09g0327400 Aldose 1-epimerase family protein 85 4e-17
Os08g0241500 Aldose 1-epimerase family protein 65 5e-11
>Os05g0569400 Aldose 1-epimerase family protein
Length = 195
Score = 404 bits (1038), Expect = e-113, Method: Compositional matrix adjust.
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 RHKNLNCFTVSIWETEEIFSILFHGSFTGFNTQFLDVQAIFKPPKAMRGGIPICFPQFGN 60
RHKNLNCFTVSIWETEEIFSILFHGSFTGFNTQFLDVQAIFKPPKAMRGGIPICFPQFGN
Sbjct: 1 RHKNLNCFTVSIWETEEIFSILFHGSFTGFNTQFLDVQAIFKPPKAMRGGIPICFPQFGN 60
Query: 61 SGTLEQHGFARNRIWALDEEHPPLNQNDNNSKASVDLILKPSEDDLKCWPHGFEFRLRVS 120
SGTLEQHGFARNRIWALDEEHPPLNQNDNNSKASVDLILKPSEDDLKCWPHGFEFRLRVS
Sbjct: 61 SGTLEQHGFARNRIWALDEEHPPLNQNDNNSKASVDLILKPSEDDLKCWPHGFEFRLRVS 120
Query: 121 LTKDGNLSLVSRIRNVNGKPFSFSFGYHTYLSVSDISEVRIEGLETLDYLDNLSQRERFT 180
LTKDGNLSLVSRIRNVNGKPFSFSFGYHTYLSVSDISEVRIEGLETLDYLDNLSQRERFT
Sbjct: 121 LTKDGNLSLVSRIRNVNGKPFSFSFGYHTYLSVSDISEVRIEGLETLDYLDNLSQRERFT 180
Query: 181 EQGDAITFESEVKNV 195
EQGDAITFESEVKNV
Sbjct: 181 EQGDAITFESEVKNV 195
>Os01g0658700 Aldose 1-epimerase family protein
Length = 314
Score = 300 bits (768), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 141/162 (87%), Positives = 149/162 (91%)
Query: 34 FLDVQAIFKPPKAMRGGIPICFPQFGNSGTLEQHGFARNRIWALDEEHPPLNQNDNNSKA 93
F +AIFKPPKAMRGGIPICFPQFGN GTLEQHGFARNR+WA+D+E PPLN NDNN K
Sbjct: 57 FTSSKAIFKPPKAMRGGIPICFPQFGNCGTLEQHGFARNRLWAIDDEAPPLNHNDNNGKV 116
Query: 94 SVDLILKPSEDDLKCWPHGFEFRLRVSLTKDGNLSLVSRIRNVNGKPFSFSFGYHTYLSV 153
SVDL+LKPSEDDLKCWPH FEFRLRVSL+ DG+LSLVSR+RNVNGKPFSFSF YHTYLSV
Sbjct: 117 SVDLLLKPSEDDLKCWPHCFEFRLRVSLSTDGDLSLVSRVRNVNGKPFSFSFAYHTYLSV 176
Query: 154 SDISEVRIEGLETLDYLDNLSQRERFTEQGDAITFESEVKNV 195
SDISEVRIEGLETLDYLDNLSQRERFTEQGDAITFESEV V
Sbjct: 177 SDISEVRIEGLETLDYLDNLSQRERFTEQGDAITFESEVDRV 218
>AK070482
Length = 330
Score = 229 bits (585), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 112/164 (68%), Positives = 129/164 (78%), Gaps = 3/164 (1%)
Query: 34 FLDVQAIFKPPKAMRGGIPICFPQFGNSGTLEQHGFARNRIWALDEEHPPLNQNDNNSKA 93
F+ +A FKPPKA+RGGIPICFPQFG G LE+HGFARNR WA+D+ PP + +KA
Sbjct: 69 FVSSKATFKPPKAIRGGIPICFPQFGTHGILEKHGFARNRFWAIDDNPPPFPTS-TAAKA 127
Query: 94 SVDLILKPSEDDLKCWPHGFEFRLRVSLTKDGNLSLVSRIRNVN--GKPFSFSFGYHTYL 151
VDLILK SE+DLK WPH FEFRLRV+L G+L+L SRIRN N G+PFSF+F YHTY
Sbjct: 128 FVDLILKTSEEDLKIWPHSFEFRLRVALGPGGDLALTSRIRNTNTDGRPFSFTFAYHTYF 187
Query: 152 SVSDISEVRIEGLETLDYLDNLSQRERFTEQGDAITFESEVKNV 195
SVSDISEVRIEGLETLDY+D L +ER TEQGDAI FESEV +
Sbjct: 188 SVSDISEVRIEGLETLDYIDCLRGKERSTEQGDAIVFESEVDKI 231
>Os04g0658000 Similar to Possible apospory-associated like protein
Length = 344
Score = 225 bits (573), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 111/182 (60%), Positives = 135/182 (74%), Gaps = 9/182 (4%)
Query: 22 LFHGSFTGFNTQ------FLDVQAIFKPPKAMRGGIPICFPQFGNSGTLEQHGFARNRIW 75
L+ G T + + F+ +AIFKPPKA+RGGIPICFPQF N G L+ HGFARNR W
Sbjct: 56 LYGGHVTSWKDEHGEELLFVSNKAIFKPPKAIRGGIPICFPQFSNFGNLDPHGFARNRTW 115
Query: 76 ALDEEHPPLNQNDNNSKASVDLILKPSEDDLKCWPHGFEFRLRVSLTKDGNLSLVSRIRN 135
+++ + PP +N KA VDLIL +E+DLK WPH +EFRLRV+L G+L L SRIRN
Sbjct: 116 SVENDPPPFPVPTSN-KAYVDLILTHTEEDLKIWPHSYEFRLRVALGPGGDLMLTSRIRN 174
Query: 136 VN--GKPFSFSFGYHTYLSVSDISEVRIEGLETLDYLDNLSQRERFTEQGDAITFESEVK 193
N GKPFSF+F YHTY S+SDISEVR+EGLETLDYLDNL +R R+TEQGDAI FESE+
Sbjct: 175 TNADGKPFSFTFAYHTYFSISDISEVRVEGLETLDYLDNLQERNRYTEQGDAIVFESELD 234
Query: 194 NV 195
+
Sbjct: 235 RI 236
>Os02g0176900 Aldose 1-epimerase family protein
Length = 304
Score = 219 bits (557), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 106/164 (64%), Positives = 125/164 (76%), Gaps = 4/164 (2%)
Query: 34 FLDVQAIFKPPKAMRGGIPICFPQFGNSGTLEQHGFARNRIWALDEEHPPLNQNDNNSKA 93
F+ +A FKPPKA+RGGI ICFPQFGN G LEQHGFARNR+W++DE PP +N
Sbjct: 53 FVSRKAYFKPPKAIRGGIQICFPQFGNHGVLEQHGFARNRLWSVDETPPPFPATTSN--C 110
Query: 94 SVDLILKPSEDDLKCWPHGFEFRLRVSLTKDGNLSLVSRIRNVN--GKPFSFSFGYHTYL 151
+DLILK S +DLK WPH FEFRLRV+L+ G+L L SRI+N N GKPF F F Y+TY
Sbjct: 111 HIDLILKQSPEDLKIWPHSFEFRLRVALSPTGDLMLTSRIKNTNADGKPFKFGFSYNTYF 170
Query: 152 SVSDISEVRIEGLETLDYLDNLSQRERFTEQGDAITFESEVKNV 195
SVSDISEVR+EGLETLDY+DNL +R TEQGDA+ FESE + V
Sbjct: 171 SVSDISEVRVEGLETLDYIDNLQCGKRCTEQGDAVVFESEAEKV 214
>Os09g0327400 Aldose 1-epimerase family protein
Length = 319
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 9/144 (6%)
Query: 28 TGFNTQFLDVQAIFKPPKAMRGGIPICFPQFGNSGTLEQHGFARNRIWALDEEHPPLNQN 87
+G + F+ A+F K + GGIP CFPQFG GT++QHGFARN W++ +
Sbjct: 86 SGKDLLFVRPDAVFNGQKPISGGIPHCFPQFG-PGTMQQHGFARNMNWSITDSEA----- 139
Query: 88 DNNSKASVDLILKPSEDDLKCWPHGFEFRLRVSLTKDGNLSLVSRIRNVNGKPFSFSFGY 147
N +V L LK W F+ +V+L +LS +I N + KPFSF+
Sbjct: 140 -NEGDPAVTLELKDDSYSRSMWDFSFQALYKVAL-HSTSLSTTLKITNTDDKPFSFNSAL 197
Query: 148 HTYLSVSDISEVRIEGLETLDYLD 171
H+Y S S IS V ++GL+ L+
Sbjct: 198 HSYFSAS-ISGVSVKGLKGCKTLN 220
>Os08g0241500 Aldose 1-epimerase family protein
Length = 92
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 39/51 (76%), Gaps = 2/51 (3%)
Query: 111 HGFEFRLRVSLTKDGNLSLVSRIRNVN--GKPFSFSFGYHTYLSVSDISEV 159
+ FEFRLRV+L +G+LSL SRIRN N G+ FS++F YHTY SVSDI V
Sbjct: 18 YSFEFRLRVALGPNGDLSLTSRIRNTNTDGRSFSYTFAYHTYFSVSDIRYV 68
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.138 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,881,132
Number of extensions: 280502
Number of successful extensions: 464
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 7
Length of query: 195
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 100
Effective length of database: 12,075,471
Effective search space: 1207547100
Effective search space used: 1207547100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)