Os04g0658000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Possible apospory-associated like protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0658000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Possible apospory-associated like protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.85 | 0.209 | 10.3 | -1.44 | 0.208 | -0.504 | 0.374 | 0.669 | -0.421 | 3.92 | 24.53 | 10 | -- | -- |
| 20.49 | 0.211 | 10.3 | -1.35 | 0.206 | -0.529 | 0.583 | -- | -0.397 | 3.46 | 24.6 | 10 | -- | -- |
| 20.18 | 0.209 | 10.3 | -1.47 | 0.207 | -0.482 | -- | 0.87 | -0.428 | 4.12 | 24.5 | 10 | -- | -- |
| 21.17 | 0.216 | 10.3 | -1.35 | 0.206 | -0.672 | -- | -- | -0.379 | 4.05 | 22.28 | 26 | -- | -- |
| 22.21 | 0.219 | 10.3 | -1.42 | -- | -0.427 | -- | 0.916 | -0.392 | -- | 22.74 | 10 | -- | -- |
| 25.38 | 0.236 | 10.3 | -1.22 | 0.135 | -- | 0.584 | -- | -0.301 | 4.05 | -- | -- | -- | -- |
| 26.1 | 0.239 | 10.3 | -1.23 | 0.158 | -- | -- | -- | -0.304 | 5.68 | -- | -- | -- | -- |
| 23.16 | 0.224 | 10.3 | -1.37 | -- | -0.828 | -- | -- | -0.355 | -- | 20.19 | 151 | -- | -- |
| 65.6 | 0.377 | 10.3 | -- | 0.143 | -0.111 | -- | -- | -0.178 | 5.69 | 22.4 | 10 | -- | -- |
| 27.4 | 0.245 | 10.3 | -1.22 | -- | -- | -- | -- | -0.3 | -- | -- | -- | -- | -- |
| 65.75 | 0.379 | 10.3 | -- | 0.139 | -- | -- | -- | -0.167 | 6.07 | -- | -- | -- | -- |
| 66.66 | 0.38 | 10.3 | -- | -- | -0.0884 | -- | -- | -0.172 | -- | 22.4 | 10 | -- | -- |
| 66.76 | 0.381 | 10.3 | -- | -- | -- | -- | -- | -0.165 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.41 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 25 | 19.72 | temperature | 25 | 10 | < th | dose dependent | sin | 7 | NA |
| 41 | 19.87 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 43 | 19.89 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 44 | 19.89 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 46 | 19.89 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 47 | 19.90 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 53 | 19.92 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 55 | 19.93 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 57 | 19.94 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 58 | 19.94 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 80 | 19.99 | temperature | 10 | 270 | > th | dose dependent | sin | 11 | NA |
| 82 | 20.00 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 87 | 20.02 | temperature | 30 | 270 | < th | dose dependent | sin | 11 | NA |
| 98 | 20.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 131 | 20.17 | temperature | 10 | 30 | > th | dose dependent | sin | 9 | NA |
| 172 | 20.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 10 |
| 174 | 20.30 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 3 |
| 202 | 20.37 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 12 |
| 242 | 20.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 314 | 20.64 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 9 |
| 339 | 20.65 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |
| 359 | 20.66 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 434 | 20.68 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 6 |
| 483 | 20.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 505 | 20.73 | temperature | 30 | 720 | < th | dose dependent | sin | 16 | NA |
| 602 | 20.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 627 | 20.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 689 | 20.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 702 | 20.89 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 8 |
| 762 | 20.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 903 | 20.96 | temperature | 25 | 720 | < th | dose independent | sin | 15 | NA |
| 957 | 20.98 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 23 |