BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0543400 Os05g0543400|AK073822
         (355 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0543400  Similar to Farnesyl diphosphate synthase (Frag...   704   0.0  
Os01g0703400  Similar to Farnesyl pyrophosphate synthetase (...   592   e-169
Os01g0695300  Similar to Farnesyl pyrophosphate synthetase (...   465   e-131
Os04g0657300  Similar to Farnesyl diphosphate synthase (Frag...   436   e-122
Os04g0657100  Similar to Farnesyl diphosphate synthase (Frag...   409   e-114

>Os05g0543400 Similar to Farnesyl diphosphate synthase (Fragment)
          Length = 355

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/342 (100%), Positives = 342/342 (100%)

Query: 14  VDKEKEEFKQIYGVLKEELLRDPAFEFTDSSRQWIDRMLDYNVPGGKCNRGLSVVDSYKL 73
           VDKEKEEFKQIYGVLKEELLRDPAFEFTDSSRQWIDRMLDYNVPGGKCNRGLSVVDSYKL
Sbjct: 14  VDKEKEEFKQIYGVLKEELLRDPAFEFTDSSRQWIDRMLDYNVPGGKCNRGLSVVDSYKL 73

Query: 74  LKGTNVLSQEDMFLASTLGWCVEWLQAYFLVLDDIMDDSHTRRGQPCWFRVPQVGSIAIN 133
           LKGTNVLSQEDMFLASTLGWCVEWLQAYFLVLDDIMDDSHTRRGQPCWFRVPQVGSIAIN
Sbjct: 74  LKGTNVLSQEDMFLASTLGWCVEWLQAYFLVLDDIMDDSHTRRGQPCWFRVPQVGSIAIN 133

Query: 134 DGIILRNHITRMLRLHFRGKLYYADLLDLFNEVEFKTASGQLLDLITTHEGEKDLNKYNI 193
           DGIILRNHITRMLRLHFRGKLYYADLLDLFNEVEFKTASGQLLDLITTHEGEKDLNKYNI
Sbjct: 134 DGIILRNHITRMLRLHFRGKLYYADLLDLFNEVEFKTASGQLLDLITTHEGEKDLNKYNI 193

Query: 194 GVHRRIVQYKTSYYSFYLPVACALLLSGEDLTKYGAVEDILVKMGIYFQVQDDYLDCYGD 253
           GVHRRIVQYKTSYYSFYLPVACALLLSGEDLTKYGAVEDILVKMGIYFQVQDDYLDCYGD
Sbjct: 194 GVHRRIVQYKTSYYSFYLPVACALLLSGEDLTKYGAVEDILVKMGIYFQVQDDYLDCYGD 253

Query: 254 PKFIGKIGTDIEDYKCSWLVVQALERADESQKSVLFENYGKKDPACVAKVKSLYRELNLE 313
           PKFIGKIGTDIEDYKCSWLVVQALERADESQKSVLFENYGKKDPACVAKVKSLYRELNLE
Sbjct: 254 PKFIGKIGTDIEDYKCSWLVVQALERADESQKSVLFENYGKKDPACVAKVKSLYRELNLE 313

Query: 314 AVFLDYENESYKKLIADIEAQPSIAVQNVLKSFLHKIYKRQK 355
           AVFLDYENESYKKLIADIEAQPSIAVQNVLKSFLHKIYKRQK
Sbjct: 314 AVFLDYENESYKKLIADIEAQPSIAVQNVLKSFLHKIYKRQK 355



>Os01g0703400 Similar to Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)
           (Farnesyl diphosphate synthetase) [Includes:
           Dimethylallyltranstransferase (EC 2.5.1.1)
          Length = 353

 Score =  592 bits (1527), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 278/341 (81%), Positives = 309/341 (90%)

Query: 15  DKEKEEFKQIYGVLKEELLRDPAFEFTDSSRQWIDRMLDYNVPGGKCNRGLSVVDSYKLL 74
           D  K  F +IY  LKEE+L DPAFEFTD S QWIDRMLDYNV GGKCNRG+SV+DS+K+L
Sbjct: 13  DSSKAAFAEIYSRLKEEMLEDPAFEFTDESLQWIDRMLDYNVLGGKCNRGISVIDSFKML 72

Query: 75  KGTNVLSQEDMFLASTLGWCVEWLQAYFLVLDDIMDDSHTRRGQPCWFRVPQVGSIAIND 134
           KGT+VL++E+ FLA TLGWC+EWLQAYFLVLDDIMD+S TRRGQPCWFRVPQVG IA+ND
Sbjct: 73  KGTDVLNKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGLIAVND 132

Query: 135 GIILRNHITRMLRLHFRGKLYYADLLDLFNEVEFKTASGQLLDLITTHEGEKDLNKYNIG 194
           GIILRNHI+R+L+ HF+GKLYY DL+DLFNEVEFKTASGQLLDLITTHEGEKDL KYN+ 
Sbjct: 133 GIILRNHISRILQRHFKGKLYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLTKYNLT 192

Query: 195 VHRRIVQYKTSYYSFYLPVACALLLSGEDLTKYGAVEDILVKMGIYFQVQDDYLDCYGDP 254
           VHRRIVQYKT+YYSFYLPVACALLLSGE+L  +G V++ILV+MG YFQVQDDYLDCYGDP
Sbjct: 193 VHRRIVQYKTAYYSFYLPVACALLLSGENLDNFGDVKNILVEMGTYFQVQDDYLDCYGDP 252

Query: 255 KFIGKIGTDIEDYKCSWLVVQALERADESQKSVLFENYGKKDPACVAKVKSLYRELNLEA 314
           +FIGKIGTDIEDYKCSWLVVQALERADE+QK +LFENYGK DP CVAKVK LY+ELNLEA
Sbjct: 253 EFIGKIGTDIEDYKCSWLVVQALERADENQKHILFENYGKPDPECVAKVKDLYKELNLEA 312

Query: 315 VFLDYENESYKKLIADIEAQPSIAVQNVLKSFLHKIYKRQK 355
           VF +YE ESY KLIADIEA P+ AVQNVLKSFLHKIYKRQK
Sbjct: 313 VFHEYERESYNKLIADIEAHPNKAVQNVLKSFLHKIYKRQK 353



>Os01g0695300 Similar to Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)
           (Farnesyl diphosphate synthetase) [Includes:
           Dimethylallyltranstransferase (EC 2.5.1.1)
          Length = 307

 Score =  465 bits (1196), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 222/307 (72%), Positives = 261/307 (85%), Gaps = 2/307 (0%)

Query: 51  MLDYNVPGGKCNRGLSVVDSYKLLKGTNVL--SQEDMFLASTLGWCVEWLQAYFLVLDDI 108
           MLDYNV GGK NRGL+VV+SYK+LK  +    S+E++FLA  LGW +EWLQAYFLVLDDI
Sbjct: 1   MLDYNVLGGKLNRGLAVVESYKILKAASATEPSEEELFLACILGWGIEWLQAYFLVLDDI 60

Query: 109 MDDSHTRRGQPCWFRVPQVGSIAINDGIILRNHITRMLRLHFRGKLYYADLLDLFNEVEF 168
           MD+S TRRG+PCWFR+P+VG IAINDG++LR+ I+R+ R +FRGK YY DLLDLFNEVE 
Sbjct: 61  MDNSQTRRGKPCWFRLPKVGLIAINDGLVLRSQISRIFRRYFRGKSYYVDLLDLFNEVEI 120

Query: 169 KTASGQLLDLITTHEGEKDLNKYNIGVHRRIVQYKTSYYSFYLPVACALLLSGEDLTKYG 228
           +T SGQLLD ITT+EG KDLNKYN+ V+RRIV+YKT+YYSFYLPVACALLL  E L  Y 
Sbjct: 121 QTTSGQLLDQITTNEGRKDLNKYNVHVYRRIVEYKTAYYSFYLPVACALLLFDESLDNYA 180

Query: 229 AVEDILVKMGIYFQVQDDYLDCYGDPKFIGKIGTDIEDYKCSWLVVQALERADESQKSVL 288
            V+ ILV+MG+YFQ QDDYLDC+G+P+ IGKIG+DIED+KCSWL VQALERADE QK VL
Sbjct: 181 QVKHILVEMGVYFQSQDDYLDCFGEPEIIGKIGSDIEDFKCSWLFVQALERADEKQKGVL 240

Query: 289 FENYGKKDPACVAKVKSLYRELNLEAVFLDYENESYKKLIADIEAQPSIAVQNVLKSFLH 348
           FENYGK DPACVAKVK LY EL+L+ VF +YE ESY+KLI+ IEAQP+ AV+ VLKSFLH
Sbjct: 241 FENYGKSDPACVAKVKDLYNELHLQRVFSEYERESYEKLISAIEAQPNEAVRAVLKSFLH 300

Query: 349 KIYKRQK 355
           KIYKR K
Sbjct: 301 KIYKRSK 307



>Os04g0657300 Similar to Farnesyl diphosphate synthase (Fragment)
          Length = 407

 Score =  436 bits (1122), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 198/343 (57%), Positives = 274/343 (79%), Gaps = 2/343 (0%)

Query: 15  DKEKEEFKQIYGVLKEELLRDPAF--EFTDSSRQWIDRMLDYNVPGGKCNRGLSVVDSYK 72
           ++ ++ F + Y  LK ELL D AF  +FT+ +RQW+ +M+DYNVPGGK NRGLSVVDSY 
Sbjct: 65  EQTRDRFVRAYERLKSELLNDRAFNFDFTEETRQWVAKMMDYNVPGGKLNRGLSVVDSYM 124

Query: 73  LLKGTNVLSQEDMFLASTLGWCVEWLQAYFLVLDDIMDDSHTRRGQPCWFRVPQVGSIAI 132
           LL+    +  ED +LA  LGWCVEWLQA  LVLDDI D+++TRR   CW+++P VG  AI
Sbjct: 125 LLRQGTEVDDEDFYLACVLGWCVEWLQASALVLDDITDNAYTRRDNLCWYKLPTVGMSAI 184

Query: 133 NDGIILRNHITRMLRLHFRGKLYYADLLDLFNEVEFKTASGQLLDLITTHEGEKDLNKYN 192
           NDG++L+ H+  +++ +F+ K Y+ DL++L+NE+  +TA GQ+LDLITTH G KDL +Y 
Sbjct: 185 NDGVLLKCHVQAIIKRYFKEKFYFLDLMELWNEIGLQTAMGQMLDLITTHTGAKDLARYR 244

Query: 193 IGVHRRIVQYKTSYYSFYLPVACALLLSGEDLTKYGAVEDILVKMGIYFQVQDDYLDCYG 252
           I  +RRIV+YKTSYYSFYLPVACALLL+G  L+ Y  ++++L++MG+YFQ+QDDYLDC+G
Sbjct: 245 IQGYRRIVKYKTSYYSFYLPVACALLLNGARLSDYVELKNVLIEMGVYFQIQDDYLDCFG 304

Query: 253 DPKFIGKIGTDIEDYKCSWLVVQALERADESQKSVLFENYGKKDPACVAKVKSLYRELNL 312
           DP+ IGK+GTDIEDYKCSWL+VQA+E A+E++  +L+ENYGK DP CVA+VKS+YREL+L
Sbjct: 305 DPEVIGKVGTDIEDYKCSWLIVQAMELANENEMKILYENYGKSDPKCVAEVKSVYRELDL 364

Query: 313 EAVFLDYENESYKKLIADIEAQPSIAVQNVLKSFLHKIYKRQK 355
           + +FL+YE+  YK L++ I+A+   A++++LKSFL KIY+R+K
Sbjct: 365 QDIFLEYESRVYKHLVSTIDAETDRAIRDILKSFLKKIYRRKK 407



>Os04g0657100 Similar to Farnesyl diphosphate synthase (Fragment)
          Length = 392

 Score =  409 bits (1050), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/338 (57%), Positives = 256/338 (75%)

Query: 18  KEEFKQIYGVLKEELLRDPAFEFTDSSRQWIDRMLDYNVPGGKCNRGLSVVDSYKLLKGT 77
           +E F Q YG L+++L+ D + E TD +R+W+ +M+DYNVPGGK NRGLSV+DSY LLK  
Sbjct: 55  RERFVQAYGRLRDDLVGDDSCELTDEARRWLAQMIDYNVPGGKLNRGLSVIDSYLLLKQG 114

Query: 78  NVLSQEDMFLASTLGWCVEWLQAYFLVLDDIMDDSHTRRGQPCWFRVPQVGSIAINDGII 137
           + ++++D FLA  LGWCVEW QA  L+LDDIMDDSHTRR Q CW+R P+VG   INDGII
Sbjct: 115 SEVTEDDFFLACVLGWCVEWFQACALLLDDIMDDSHTRRDQICWYRRPEVGLRGINDGII 174

Query: 138 LRNHITRMLRLHFRGKLYYADLLDLFNEVEFKTASGQLLDLITTHEGEKDLNKYNIGVHR 197
           L+ HI  M++ +FR K Y+ D+L++++E+  +T+ GQ+LDLI+TH G  DL KY+I  +R
Sbjct: 175 LKCHILIMIKKYFREKPYFLDILEIWSEIALQTSLGQMLDLISTHTGADDLAKYSIEGYR 234

Query: 198 RIVQYKTSYYSFYLPVACALLLSGEDLTKYGAVEDILVKMGIYFQVQDDYLDCYGDPKFI 257
           RIV+YKT+YYSFYLPVA ALLLSG  L  +  ++DIL++MGIYFQ+QDDYLDC+ DP  I
Sbjct: 235 RIVKYKTAYYSFYLPVANALLLSGAKLEDFSGLKDILIEMGIYFQIQDDYLDCFADPNTI 294

Query: 258 GKIGTDIEDYKCSWLVVQALERADESQKSVLFENYGKKDPACVAKVKSLYRELNLEAVFL 317
           GKIGTDIED+KCSWL+VQAL  AD +Q  VL  NYGKKD + V++VK  Y  L+L+ +F 
Sbjct: 295 GKIGTDIEDHKCSWLIVQALGHADNNQIEVLHRNYGKKDSSSVSEVKRTYAALDLKDIFS 354

Query: 318 DYENESYKKLIADIEAQPSIAVQNVLKSFLHKIYKRQK 355
           ++E   Y  L+  IEAQ   A + +L SFL KI++R+K
Sbjct: 355 EFERRCYNHLVTSIEAQKDHAAREILISFLKKIHQRKK 392



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.140    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,229,400
Number of extensions: 466992
Number of successful extensions: 875
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 873
Number of HSP's successfully gapped: 5
Length of query: 355
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 253
Effective length of database: 11,709,973
Effective search space: 2962623169
Effective search space used: 2962623169
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)