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Os04g0657300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Farnesyl diphosphate synthase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.9 (0.0262) R2 : 0.725
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.93 (0.0693) R2dC : 0.48 R2C : 0.546
β3 : 0.8 (0.0483) R2dE : 0.169 R2E : 0.242
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.193 (0.0552) R2dN8 : 0.00961 R2N8 : 0.00344
σ : 0.493
deviance : 111.85
__
_____
C
peak time of C : 6.31
E
wheather : radiation
threshold : 6.26
memory length : 6
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
101.94 0.474 13.9 -0.185 1.93 0.811 1.77 0.338 -0.206 6.3 6.29 7 -- --
102.56 0.472 13.9 -0.176 1.93 0.773 1.87 -- -0.202 6.43 6.29 6 -- --
109.36 0.487 13.9 -0.182 1.94 0.804 -- 0.551 -0.211 6.3 6.28 6 -- --
111.28 0.491 13.9 -0.147 1.94 0.797 -- -- -0.209 6.32 6.28 6 -- --
285.89 0.792 13.9 -0.0998 -- 1.02 -- 0.311 -0.209 -- 4.82 5 -- --
122.4 0.519 13.9 -0.215 2.25 -- 1.65 -- -0.215 7.83 -- -- -- --
130.3 0.535 13.9 -0.171 2.25 -- -- -- -0.217 7.83 -- -- -- --
286.55 0.792 13.9 -0.0936 -- 1.02 -- -- -0.208 -- 4.82 5 -- --
111.85 0.493 13.9 -- 1.93 0.8 -- -- -0.193 6.31 6.26 6 -- --
403.78 0.939 13.9 -0.145 -- -- -- -- -0.186 -- -- -- -- --
131.07 0.536 13.9 -- 2.24 -- -- -- -0.198 7.84 -- -- -- --
286.58 0.788 13.9 -- -- 1.04 -- -- -0.165 -- 4.824 4 -- --
404.33 0.939 13.9 -- -- -- -- -- -0.17 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 91.66 humidity 50.0 10 > th dose dependent rect. 1 18
3 92.17 radiation 10.0 10 < th dose dependent rect. 1 18
5 92.46 humidity 90.0 30 < th dose independent rect. 20 18
27 94.29 radiation 10.0 10 < th dose dependent sin 1 NA
29 94.34 radiation 1.0 90 > th dose independent rect. 4 11
53 94.71 atmosphere 995.0 270 > th dose independent rect. 24 17
60 94.87 temperature 15.0 270 > th dose independent rect. 4 9
66 94.98 temperature 15.0 90 > th dose independent rect. 19 6
70 95.05 temperature 15.0 270 > th dose independent rect. 17 7
88 95.27 temperature 15.0 270 > th dose independent rect. 17 20
90 95.41 precipitation 0.1 270 < th dose independent rect. 17 20
91 95.41 precipitation 0.1 270 < th dose dependent rect. 17 20
92 95.42 atmosphere 995.0 270 > th dose independent rect. 13 4
94 95.43 precipitation 0.1 270 < th dose independent rect. 17 7
95 95.43 precipitation 0.1 270 < th dose dependent rect. 17 7
96 95.62 wind 9.0 270 < th dose independent rect. 24 17
97 95.64 radiation 1.0 90 < th dose independent rect. 1 18
102 95.74 precipitation 0.1 270 < th dose independent rect. 4 9
103 95.74 precipitation 0.1 270 < th dose dependent rect. 4 9
107 95.76 atmosphere 995.0 270 > th dose independent rect. 13 15
111 95.96 humidity 70.0 90 > th dose independent rect. 19 6
113 95.97 radiation 20.0 270 < th dose independent rect. 17 7
116 95.97 temperature 10.0 270 > th dose independent rect. 24 17
119 95.98 wind 1.0 270 > th dose independent rect. 13 4
120 95.99 atmosphere 1015.0 270 < th dose independent rect. 24 17
122 96.04 wind 9.0 90 < th dose independent rect. 19 6
125 96.06 wind 9.0 270 < th dose independent rect. 17 7
127 96.06 wind 9.0 270 < th dose independent rect. 13 15
132 96.07 temperature 30.0 90 < th dose independent rect. 19 6
133 96.07 humidity 50.0 90 > th dose independent rect. 19 6
135 96.07 atmosphere 995.0 90 > th dose independent rect. 19 6
136 96.07 radiation 1.0 90 < th dose independent rect. 19 6
143 96.07 radiation 1.0 90 < th dose dependent rect. 19 6
151 96.14 atmosphere 1015.0 90 < th dose independent rect. 19 6
155 96.18 atmosphere 995.0 270 > th dose independent rect. 23 19
156 96.18 temperature 10.0 90 > th dose dependent rect. 19 6
160 96.24 wind 1.0 270 > th dose independent rect. 17 7
163 96.27 atmosphere 995.0 270 > th dose independent rect. 4 9
164 96.27 atmosphere 1015.0 270 < th dose independent rect. 4 9
165 96.27 temperature 10.0 270 > th dose independent rect. 13 15
169 96.36 radiation 40.0 270 < th dose dependent rect. 17 7
175 96.48 wind 9.0 270 < th dose independent rect. 4 9
176 96.50 temperature 15.0 270 > th dose independent rect. 18 18
178 96.51 temperature 20.0 270 > th dose independent rect. 13 4
181 96.53 humidity 50.0 270 > th dose independent rect. 17 7
187 96.55 atmosphere 1015.0 270 < th dose independent rect. 17 7
190 96.59 wind 9.0 270 < th dose independent rect. 13 4
192 96.64 radiation 10.0 10 < th dose independent rect. 1 18
196 96.69 atmosphere 995.0 270 > th dose independent rect. 12 6
206 96.82 humidity 50.0 10 > th dose dependent rect. 1 9
211 96.89 temperature 10.0 270 > th dose independent rect. 13 4
213 96.89 atmosphere 1010.0 270 < th dose independent rect. 13 4
228 97.00 wind 1.0 270 > th dose independent rect. 12 6
232 97.05 precipitation 0.1 90 < th dose independent rect. 19 6
234 97.05 precipitation 0.1 90 < th dose dependent rect. 19 6
238 97.07 wind 9.0 270 < th dose independent rect. 17 20
241 97.08 temperature 10.0 10 > th dose dependent rect. 20 18
242 97.09 wind 9.0 270 < th dose independent rect. 23 19
243 97.10 precipitation 0.1 270 < th dose independent rect. 13 4
244 97.10 precipitation 0.1 270 < th dose dependent rect. 13 4
247 97.13 atmosphere 995.0 270 > th dose dependent rect. 13 4
250 97.16 precipitation 0.1 270 < th dose independent rect. 24 17
251 97.16 precipitation 0.1 270 < th dose dependent rect. 24 17
259 97.21 temperature 10.0 10 > th dose dependent rect. 20 5
272 97.37 temperature 10.0 270 > th dose dependent rect. 19 4
302 97.51 temperature 10.0 270 > th dose independent rect. 23 19
310 97.58 temperature 15.0 270 > th dose independent rect. 8 15
314 97.60 radiation 40.0 10 < th dose dependent rect. 14 16
320 97.64 temperature 15.0 270 > th dose independent rect. 19 3
323 97.68 atmosphere 995.0 270 > th dose independent rect. 17 7
330 97.72 temperature 20.0 270 > th dose independent rect. 12 6
334 97.75 atmosphere 995.0 10 > th dose independent rect. 14 6
356 97.87 wind 9.0 270 < th dose independent rect. 12 6
357 97.87 precipitation 0.1 270 < th dose independent rect. 18 18
359 97.87 precipitation 0.1 270 < th dose dependent rect. 18 18
367 97.92 radiation 10.0 10 < th dose independent rect. 1 16
370 97.94 atmosphere 1015.0 270 < th dose independent rect. 19 3
371 97.95 radiation 40.0 270 < th dose independent rect. 14 3
378 98.01 humidity 50.0 270 > th dose independent rect. 13 4
385 98.06 atmosphere 1010.0 10 < th dose independent rect. 20 5
400 98.11 temperature 15.0 10 > th dose independent rect. 20 5
426 98.15 atmosphere 995.0 10 > th dose dependent rect. 14 6
433 98.19 humidity 80.0 10 > th dose dependent rect. 1 11
434 98.20 radiation 1.0 270 > th dose independent rect. 13 4
435 98.20 wind 9.0 270 < th dose independent rect. 18 18
441 98.26 temperature 10.0 270 > th dose independent rect. 12 6
443 98.26 atmosphere 1015.0 270 < th dose independent rect. 12 6
445 98.26 wind 9.0 270 < th dose independent rect. 22 21
448 98.27 temperature 15.0 10 > th dose independent rect. 20 18
458 98.36 humidity 50.0 90 > th dose independent rect. 1 18
469 98.41 wind 7.0 10 < th dose independent rect. 20 18
504 98.51 radiation 1.0 1440 < th dose dependent rect. 20 6
509 98.52 humidity 50.0 270 > th dose dependent rect. 22 10
511 98.53 radiation 1.0 270 < th dose independent rect. 23 16
516 98.56 humidity 90.0 10 < th dose independent rect. 6 8
522 98.61 atmosphere 995.0 270 > th dose independent rect. 18 18
525 98.62 wind 9.0 270 < th dose independent rect. 19 3
531 98.63 radiation 1.0 10 > th dose independent rect. 6 10
532 98.63 humidity 50.0 270 > th dose independent rect. 18 18
534 98.64 radiation 40.0 43200 < th dose dependent rect. 20 6
537 98.65 atmosphere 995.0 270 > th dose independent rect. 17 20
540 98.68 radiation 1.0 90 < th dose independent sin 2 NA
544 98.69 temperature 30.0 270 < th dose independent rect. 19 3
545 98.69 humidity 50.0 270 > th dose independent rect. 19 3
546 98.69 atmosphere 995.0 270 > th dose independent rect. 19 3
547 98.69 radiation 1.0 270 < th dose independent rect. 19 3
554 98.69 atmosphere 995.0 10 > th dose independent rect. 1 19
555 98.69 temperature 10.0 270 > th dose independent rect. 22 21
556 98.69 radiation 1.0 270 < th dose dependent rect. 19 3
573 98.73 wind 9.0 10 < th dose independent rect. 14 6
579 98.74 radiation 40.0 270 < th dose dependent rect. 23 9
592 98.82 temperature 10.0 10 > th dose independent rect. 14 6
594 98.82 atmosphere 1010.0 10 < th dose independent rect. 14 6
599 98.82 atmosphere 995.0 10 > th dose independent rect. 20 18
603 98.83 atmosphere 1015.0 270 < th dose independent rect. 17 20
605 98.84 wind 1.0 10 > th dose independent rect. 14 6
615 98.86 humidity 50.0 270 > th dose independent rect. 17 20
623 98.89 radiation 40.0 10 < th dose independent rect. 14 6
629 98.91 precipitation 0.1 270 < th dose independent rect. 19 3
630 98.91 precipitation 0.1 10 < th dose independent rect. 14 6
635 98.91 precipitation 0.1 270 < th dose dependent rect. 19 3
637 98.91 precipitation 0.1 10 < th dose dependent rect. 14 6
643 98.93 atmosphere 1015.0 270 < th dose independent rect. 18 18
649 98.94 temperature 10.0 1440 > th dose independent rect. 20 6
652 98.94 temperature 30.0 1440 < th dose independent rect. 20 6
656 98.94 humidity 50.0 1440 > th dose independent rect. 20 6
662 98.94 atmosphere 995.0 1440 > th dose independent rect. 20 6
663 98.94 radiation 1.0 1440 < th dose independent rect. 20 6
683 98.94 temperature 10.0 1440 > th dose independent rect. 2 18
710 99.02 precipitation 0.1 10 < th dose independent rect. 20 18
712 99.02 precipitation 0.1 10 < th dose dependent rect. 20 18
738 99.08 wind 1.0 270 > th dose independent rect. 19 3
748 99.09 atmosphere 1015.0 10 < th dose independent rect. 20 18
753 99.11 radiation 1.0 90 > th dose independent sin 2 NA
756 99.13 wind 7.0 10 < th dose independent rect. 20 5
764 99.16 humidity 50.0 270 > th dose independent rect. 4 9
800 99.22 temperature 30.0 10 < th dose independent rect. 20 5
801 99.22 humidity 50.0 10 > th dose independent rect. 20 5
804 99.22 atmosphere 995.0 10 > th dose independent rect. 20 5
805 99.22 radiation 1.0 10 < th dose independent rect. 20 5
810 99.22 humidity 50.0 10 > th dose independent rect. 14 6
813 99.22 temperature 10.0 10 > th dose independent rect. 1 19
815 99.22 atmosphere 1015.0 10 < th dose independent rect. 1 19
816 99.22 radiation 1.0 10 < th dose dependent rect. 20 5
838 99.28 precipitation 0.1 270 < th dose independent rect. 12 6
840 99.28 precipitation 0.1 270 < th dose dependent rect. 12 6
853 99.31 wind 9.0 10 < th dose independent rect. 1 19
858 99.32 radiation 40.0 90 < th dose independent rect. 1 18
863 99.34 radiation 40.0 90 < th dose independent rect. 13 6
878 99.37 precipitation 0.1 10 < th dose independent rect. 20 5
879 99.37 precipitation 0.1 10 < th dose dependent rect. 20 5
904 99.45 radiation 40.0 10 < th dose dependent rect. 13 7
911 99.47 temperature 10.0 10 > th dose dependent rect. 6 8
916 99.49 temperature 20.0 10 > th dose independent rect. 6 8
926 99.50 radiation 40.0 30 < th dose dependent rect. 1 9
964 99.54 humidity 70.0 270 > th dose independent rect. 23 9
987 99.62 atmosphere 995.0 10 > th dose independent rect. 14 16