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Os01g0703400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS) (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.83 | 0.357 | 14.5 | -0.802 | 2.66 | -1.26 | 1.59 | -0.253 | 0.0469 | 8.09 | 0.6756 | 1427 | -- | -- |
| 57.85 | 0.354 | 14.5 | -0.805 | 2.67 | -1.19 | 1.57 | -- | 0.0551 | 8.1 | 0.6264 | 1419 | -- | -- |
| 65.39 | 0.377 | 14.5 | -0.792 | 2.66 | -1.16 | -- | 0.105 | 0.0401 | 8.06 | 0.6701 | 1425 | -- | -- |
| 65.39 | 0.377 | 14.5 | -0.788 | 2.66 | -1.18 | -- | -- | 0.0466 | 8.05 | 0.65 | 1426 | -- | -- |
| 343.05 | 0.867 | 14.5 | -0.483 | -- | -1.04 | -- | -0.591 | 0.219 | -- | 1.171 | 1526 | -- | -- |
| 73.42 | 0.402 | 14.4 | -0.526 | 2.65 | -- | 1.52 | -- | 0.196 | 8.03 | -- | -- | -- | -- |
| 80.33 | 0.42 | 14.4 | -0.484 | 2.65 | -- | -- | -- | 0.194 | 8 | -- | -- | -- | -- |
| 344.46 | 0.868 | 14.5 | -0.482 | -- | -1.05 | -- | -- | 0.209 | -- | 1.712 | 1531 | -- | -- |
| 79.12 | 0.414 | 14.5 | -- | 2.62 | -0.774 | -- | -- | 0.126 | 8.09 | 1.604 | 1426 | -- | -- |
| 462.87 | 1.01 | 14.5 | -0.458 | -- | -- | -- | -- | 0.228 | -- | -- | -- | -- | -- |
| 86.5 | 0.435 | 14.4 | -- | 2.64 | -- | -- | -- | 0.248 | 8.02 | -- | -- | -- | -- |
| 168.93 | 0.605 | 14.3 | -- | -- | 3.1 | -- | -- | 0.233 | -- | 2.549 | 953 | -- | -- |
| 468.41 | 1.01 | 14.5 | -- | -- | -- | -- | -- | 0.279 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.44 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 2 | 56.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 13 |
| 8 | 56.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 21 |
| 27 | 56.83 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 30 | 56.85 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 10 |
| 37 | 56.90 | radiation | 1 | 1440 | < th | dose dependent | sin | 20 | NA |
| 52 | 57.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 8 |
| 53 | 57.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 10 |
| 81 | 57.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 16 |
| 114 | 57.53 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 122 | 57.66 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 123 | 57.66 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 15 |
| 125 | 57.69 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 138 | 57.70 | temperature | 20 | 270 | > th | dose dependent | sin | 8 | NA |
| 139 | 57.72 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 21 |
| 183 | 57.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 19 |
| 187 | 58.02 | radiation | 1 | 1440 | < th | dose independent | sin | 21 | NA |
| 193 | 58.04 | radiation | 1 | 1440 | > th | dose independent | sin | 21 | NA |
| 239 | 58.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 17 |
| 278 | 58.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 280 | 58.27 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 287 | 58.28 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 296 | 58.30 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 307 | 58.36 | humidity | 90 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 338 | 58.44 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 8 |
| 339 | 58.44 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 10 |
| 344 | 58.47 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 377 | 58.50 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 390 | 58.51 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 14 |
| 401 | 58.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 443 | 58.69 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 497 | 58.80 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 13 |
| 515 | 58.85 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 11 |
| 578 | 59.22 | humidity | 90 | 720 | > th | dose dependent | sin | 19 | NA |
| 580 | 59.23 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 586 | 59.24 | radiation | 1 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 592 | 59.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 600 | 59.27 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 620 | 59.31 | radiation | 1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 688 | 59.40 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 18 |
| 822 | 59.54 | temperature | 30 | 10 | < th | dose dependent | sin | 5 | NA |
