BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0703400 Os01g0703400|AK061657
         (353 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0703400  Similar to Farnesyl pyrophosphate synthetase (...   733   0.0  
Os05g0543400  Similar to Farnesyl diphosphate synthase (Frag...   595   e-170
Os01g0695300  Similar to Farnesyl pyrophosphate synthetase (...   488   e-138
Os04g0657300  Similar to Farnesyl diphosphate synthase (Frag...   445   e-125
Os04g0657100  Similar to Farnesyl diphosphate synthase (Frag...   402   e-112

>Os01g0703400 Similar to Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)
           (Farnesyl diphosphate synthetase) [Includes:
           Dimethylallyltranstransferase (EC 2.5.1.1)
          Length = 353

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/353 (100%), Positives = 353/353 (100%)

Query: 1   MAAAVVANGASGDSSKAAFAEIYSRLKEEMLEDPAFEFTDESLQWIDRMLDYNVLGGKCN 60
           MAAAVVANGASGDSSKAAFAEIYSRLKEEMLEDPAFEFTDESLQWIDRMLDYNVLGGKCN
Sbjct: 1   MAAAVVANGASGDSSKAAFAEIYSRLKEEMLEDPAFEFTDESLQWIDRMLDYNVLGGKCN 60

Query: 61  RGISVIDSFKMLKGTDVLNKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWF 120
           RGISVIDSFKMLKGTDVLNKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWF
Sbjct: 61  RGISVIDSFKMLKGTDVLNKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWF 120

Query: 121 RVPQVGLIAVNDGIILRNHISRILQRHFKGKLYYVDLIDLFNEVEFKTASGQLLDLITTH 180
           RVPQVGLIAVNDGIILRNHISRILQRHFKGKLYYVDLIDLFNEVEFKTASGQLLDLITTH
Sbjct: 121 RVPQVGLIAVNDGIILRNHISRILQRHFKGKLYYVDLIDLFNEVEFKTASGQLLDLITTH 180

Query: 181 EGEKDLTKYNLTVHRRIVQYKTAYYSFYLPVACALLLSGENLDNFGDVKNILVEMGTYFQ 240
           EGEKDLTKYNLTVHRRIVQYKTAYYSFYLPVACALLLSGENLDNFGDVKNILVEMGTYFQ
Sbjct: 181 EGEKDLTKYNLTVHRRIVQYKTAYYSFYLPVACALLLSGENLDNFGDVKNILVEMGTYFQ 240

Query: 241 VQDDYLDCYGDPEFIGKIGTDIEDYKCSWLVVQALERADENQKHILFENYGKPDPECVAK 300
           VQDDYLDCYGDPEFIGKIGTDIEDYKCSWLVVQALERADENQKHILFENYGKPDPECVAK
Sbjct: 241 VQDDYLDCYGDPEFIGKIGTDIEDYKCSWLVVQALERADENQKHILFENYGKPDPECVAK 300

Query: 301 VKDLYKELNLEAVFHEYERESYNKLIADIEAHPNKAVQNVLKSFLHKIYKRQK 353
           VKDLYKELNLEAVFHEYERESYNKLIADIEAHPNKAVQNVLKSFLHKIYKRQK
Sbjct: 301 VKDLYKELNLEAVFHEYERESYNKLIADIEAHPNKAVQNVLKSFLHKIYKRQK 353



>Os05g0543400 Similar to Farnesyl diphosphate synthase (Fragment)
          Length = 355

 Score =  595 bits (1535), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 283/355 (79%), Positives = 314/355 (88%), Gaps = 2/355 (0%)

Query: 1   MAAA--VVANGASGDSSKAAFAEIYSRLKEEMLEDPAFEFTDESLQWIDRMLDYNVLGGK 58
           MAAA      G   D  K  F +IY  LKEE+L DPAFEFTD S QWIDRMLDYNV GGK
Sbjct: 1   MAAANGSACGGGGVDKEKEEFKQIYGVLKEELLRDPAFEFTDSSRQWIDRMLDYNVPGGK 60

Query: 59  CNRGISVIDSFKMLKGTDVLNKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPC 118
           CNRG+SV+DS+K+LKGT+VL++E+ FLA TLGWC+EWLQAYFLVLDDIMD+S TRRGQPC
Sbjct: 61  CNRGLSVVDSYKLLKGTNVLSQEDMFLASTLGWCVEWLQAYFLVLDDIMDDSHTRRGQPC 120

Query: 119 WFRVPQVGLIAVNDGIILRNHISRILQRHFKGKLYYVDLIDLFNEVEFKTASGQLLDLIT 178
           WFRVPQVG IA+NDGIILRNHI+R+L+ HF+GKLYY DL+DLFNEVEFKTASGQLLDLIT
Sbjct: 121 WFRVPQVGSIAINDGIILRNHITRMLRLHFRGKLYYADLLDLFNEVEFKTASGQLLDLIT 180

Query: 179 THEGEKDLTKYNLTVHRRIVQYKTAYYSFYLPVACALLLSGENLDNFGDVKNILVEMGTY 238
           THEGEKDL KYN+ VHRRIVQYKT+YYSFYLPVACALLLSGE+L  +G V++ILV+MG Y
Sbjct: 181 THEGEKDLNKYNIGVHRRIVQYKTSYYSFYLPVACALLLSGEDLTKYGAVEDILVKMGIY 240

Query: 239 FQVQDDYLDCYGDPEFIGKIGTDIEDYKCSWLVVQALERADENQKHILFENYGKPDPECV 298
           FQVQDDYLDCYGDP+FIGKIGTDIEDYKCSWLVVQALERADE+QK +LFENYGK DP CV
Sbjct: 241 FQVQDDYLDCYGDPKFIGKIGTDIEDYKCSWLVVQALERADESQKSVLFENYGKKDPACV 300

Query: 299 AKVKDLYKELNLEAVFHEYERESYNKLIADIEAHPNKAVQNVLKSFLHKIYKRQK 353
           AKVK LY+ELNLEAVF +YE ESY KLIADIEA P+ AVQNVLKSFLHKIYKRQK
Sbjct: 301 AKVKSLYRELNLEAVFLDYENESYKKLIADIEAQPSIAVQNVLKSFLHKIYKRQK 355



>Os01g0695300 Similar to Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)
           (Farnesyl diphosphate synthetase) [Includes:
           Dimethylallyltranstransferase (EC 2.5.1.1)
          Length = 307

 Score =  488 bits (1257), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 230/307 (74%), Positives = 267/307 (86%), Gaps = 2/307 (0%)

Query: 49  MLDYNVLGGKCNRGISVIDSFKMLKGTDVL--NKEETFLACTLGWCIEWLQAYFLVLDDI 106
           MLDYNVLGGK NRG++V++S+K+LK       ++EE FLAC LGW IEWLQAYFLVLDDI
Sbjct: 1   MLDYNVLGGKLNRGLAVVESYKILKAASATEPSEEELFLACILGWGIEWLQAYFLVLDDI 60

Query: 107 MDNSQTRRGQPCWFRVPQVGLIAVNDGIILRNHISRILQRHFKGKLYYVDLIDLFNEVEF 166
           MDNSQTRRG+PCWFR+P+VGLIA+NDG++LR+ ISRI +R+F+GK YYVDL+DLFNEVE 
Sbjct: 61  MDNSQTRRGKPCWFRLPKVGLIAINDGLVLRSQISRIFRRYFRGKSYYVDLLDLFNEVEI 120

Query: 167 KTASGQLLDLITTHEGEKDLTKYNLTVHRRIVQYKTAYYSFYLPVACALLLSGENLDNFG 226
           +T SGQLLD ITT+EG KDL KYN+ V+RRIV+YKTAYYSFYLPVACALLL  E+LDN+ 
Sbjct: 121 QTTSGQLLDQITTNEGRKDLNKYNVHVYRRIVEYKTAYYSFYLPVACALLLFDESLDNYA 180

Query: 227 DVKNILVEMGTYFQVQDDYLDCYGDPEFIGKIGTDIEDYKCSWLVVQALERADENQKHIL 286
            VK+ILVEMG YFQ QDDYLDC+G+PE IGKIG+DIED+KCSWL VQALERADE QK +L
Sbjct: 181 QVKHILVEMGVYFQSQDDYLDCFGEPEIIGKIGSDIEDFKCSWLFVQALERADEKQKGVL 240

Query: 287 FENYGKPDPECVAKVKDLYKELNLEAVFHEYERESYNKLIADIEAHPNKAVQNVLKSFLH 346
           FENYGK DP CVAKVKDLY EL+L+ VF EYERESY KLI+ IEA PN+AV+ VLKSFLH
Sbjct: 241 FENYGKSDPACVAKVKDLYNELHLQRVFSEYERESYEKLISAIEAQPNEAVRAVLKSFLH 300

Query: 347 KIYKRQK 353
           KIYKR K
Sbjct: 301 KIYKRSK 307



>Os04g0657300 Similar to Farnesyl diphosphate synthase (Fragment)
          Length = 407

 Score =  445 bits (1145), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 196/346 (56%), Positives = 275/346 (79%), Gaps = 2/346 (0%)

Query: 10  ASGDSSKAAFAEIYSRLKEEMLEDPAF--EFTDESLQWIDRMLDYNVLGGKCNRGISVID 67
             G+ ++  F   Y RLK E+L D AF  +FT+E+ QW+ +M+DYNV GGK NRG+SV+D
Sbjct: 62  GQGEQTRDRFVRAYERLKSELLNDRAFNFDFTEETRQWVAKMMDYNVPGGKLNRGLSVVD 121

Query: 68  SFKMLKGTDVLNKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGL 127
           S+ +L+    ++ E+ +LAC LGWC+EWLQA  LVLDDI DN+ TRR   CW+++P VG+
Sbjct: 122 SYMLLRQGTEVDDEDFYLACVLGWCVEWLQASALVLDDITDNAYTRRDNLCWYKLPTVGM 181

Query: 128 IAVNDGIILRNHISRILQRHFKGKLYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLT 187
            A+NDG++L+ H+  I++R+FK K Y++DL++L+NE+  +TA GQ+LDLITTH G KDL 
Sbjct: 182 SAINDGVLLKCHVQAIIKRYFKEKFYFLDLMELWNEIGLQTAMGQMLDLITTHTGAKDLA 241

Query: 188 KYNLTVHRRIVQYKTAYYSFYLPVACALLLSGENLDNFGDVKNILVEMGTYFQVQDDYLD 247
           +Y +  +RRIV+YKT+YYSFYLPVACALLL+G  L ++ ++KN+L+EMG YFQ+QDDYLD
Sbjct: 242 RYRIQGYRRIVKYKTSYYSFYLPVACALLLNGARLSDYVELKNVLIEMGVYFQIQDDYLD 301

Query: 248 CYGDPEFIGKIGTDIEDYKCSWLVVQALERADENQKHILFENYGKPDPECVAKVKDLYKE 307
           C+GDPE IGK+GTDIEDYKCSWL+VQA+E A+EN+  IL+ENYGK DP+CVA+VK +Y+E
Sbjct: 302 CFGDPEVIGKVGTDIEDYKCSWLIVQAMELANENEMKILYENYGKSDPKCVAEVKSVYRE 361

Query: 308 LNLEAVFHEYERESYNKLIADIEAHPNKAVQNVLKSFLHKIYKRQK 353
           L+L+ +F EYE   Y  L++ I+A  ++A++++LKSFL KIY+R+K
Sbjct: 362 LDLQDIFLEYESRVYKHLVSTIDAETDRAIRDILKSFLKKIYRRKK 407



>Os04g0657100 Similar to Farnesyl diphosphate synthase (Fragment)
          Length = 392

 Score =  402 bits (1034), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 183/339 (53%), Positives = 257/339 (75%)

Query: 15  SKAAFAEIYSRLKEEMLEDPAFEFTDESLQWIDRMLDYNVLGGKCNRGISVIDSFKMLKG 74
           ++  F + Y RL+++++ D + E TDE+ +W+ +M+DYNV GGK NRG+SVIDS+ +LK 
Sbjct: 54  ARERFVQAYGRLRDDLVGDDSCELTDEARRWLAQMIDYNVPGGKLNRGLSVIDSYLLLKQ 113

Query: 75  TDVLNKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPCWFRVPQVGLIAVNDGI 134
              + +++ FLAC LGWC+EW QA  L+LDDIMD+S TRR Q CW+R P+VGL  +NDGI
Sbjct: 114 GSEVTEDDFFLACVLGWCVEWFQACALLLDDIMDDSHTRRDQICWYRRPEVGLRGINDGI 173

Query: 135 ILRNHISRILQRHFKGKLYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLTKYNLTVH 194
           IL+ HI  +++++F+ K Y++D++++++E+  +T+ GQ+LDLI+TH G  DL KY++  +
Sbjct: 174 ILKCHILIMIKKYFREKPYFLDILEIWSEIALQTSLGQMLDLISTHTGADDLAKYSIEGY 233

Query: 195 RRIVQYKTAYYSFYLPVACALLLSGENLDNFGDVKNILVEMGTYFQVQDDYLDCYGDPEF 254
           RRIV+YKTAYYSFYLPVA ALLLSG  L++F  +K+IL+EMG YFQ+QDDYLDC+ DP  
Sbjct: 234 RRIVKYKTAYYSFYLPVANALLLSGAKLEDFSGLKDILIEMGIYFQIQDDYLDCFADPNT 293

Query: 255 IGKIGTDIEDYKCSWLVVQALERADENQKHILFENYGKPDPECVAKVKDLYKELNLEAVF 314
           IGKIGTDIED+KCSWL+VQAL  AD NQ  +L  NYGK D   V++VK  Y  L+L+ +F
Sbjct: 294 IGKIGTDIEDHKCSWLIVQALGHADNNQIEVLHRNYGKKDSSSVSEVKRTYAALDLKDIF 353

Query: 315 HEYERESYNKLIADIEAHPNKAVQNVLKSFLHKIYKRQK 353
            E+ER  YN L+  IEA  + A + +L SFL KI++R+K
Sbjct: 354 SEFERRCYNHLVTSIEAQKDHAAREILISFLKKIHQRKK 392



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,767,943
Number of extensions: 496166
Number of successful extensions: 935
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 933
Number of HSP's successfully gapped: 5
Length of query: 353
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 251
Effective length of database: 11,709,973
Effective search space: 2939203223
Effective search space used: 2939203223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)