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Os01g0695300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS) (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.1 | 0.441 | 13.5 | -0.898 | 1.85 | -1.72 | 0.761 | 5.09 | -0.133 | 7.43 | 94.75 | 226 | -- | -- |
| 95.55 | 0.455 | 13.5 | -0.875 | 1.86 | -2.08 | 1.39 | -- | -0.127 | 7.42 | 94.87 | 253 | -- | -- |
| 89.43 | 0.44 | 13.5 | -0.886 | 1.85 | -1.64 | -- | 5.77 | -0.138 | 7.43 | 94.72 | 236 | -- | -- |
| 100.36 | 0.467 | 13.5 | -0.831 | 1.83 | -2.1 | -- | -- | -0.123 | 7.5 | 94.91 | 263 | -- | -- |
| 242.82 | 0.726 | 13.5 | -0.875 | -- | 0.639 | -- | 5.55 | -0.0102 | -- | 94 | 168 | -- | -- |
| 110.42 | 0.493 | 13.5 | -0.883 | 1.71 | -- | 1.25 | -- | -0.059 | 7.56 | -- | -- | -- | -- |
| 114.77 | 0.502 | 13.5 | -0.852 | 1.71 | -- | -- | -- | -0.0605 | 7.6 | -- | -- | -- | -- |
| 199.81 | 0.658 | 13.5 | -0.788 | -- | 1.66 | -- | -- | -0.00732 | -- | 38.21 | 552 | -- | -- |
| 119.62 | 0.509 | 13.5 | -- | 1.88 | -2.05 | -- | -- | -0.0414 | 7.48 | 94.82 | 264 | -- | -- |
| 272.58 | 0.771 | 13.5 | -0.828 | -- | -- | -- | -- | -0.0346 | -- | -- | -- | -- | -- |
| 133.89 | 0.541 | 13.5 | -- | 1.71 | -- | -- | -- | 0.0343 | 7.63 | -- | -- | -- | -- |
| 216.17 | 0.685 | 13.5 | -- | -- | 1.68 | -- | -- | 0.0802 | -- | 25.09 | 557 | -- | -- |
| 290.65 | 0.796 | 13.5 | -- | -- | -- | -- | -- | 0.0573 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.12 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 2 | 82.17 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 4 | 83.24 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 9 | 84.13 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 13 | 84.75 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 14 | 84.75 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 20 | 85.57 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 37 | 87.62 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 42 | 87.82 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 75 | 88.94 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 100 | 89.31 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 107 | 89.49 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 10 | 15 |
| 143 | 90.05 | humidity | 90.0 | 90 | < th | dose independent | rect. | 20 | 19 |
| 146 | 90.11 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 174 | 90.20 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 176 | 90.22 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 183 | 90.36 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 213 | 90.47 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 242 | 90.58 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 4 |
| 329 | 91.26 | radiation | 1.0 | 1440 | < th | dose independent | sin | 21 | NA |
| 339 | 91.32 | radiation | 1.0 | 1440 | > th | dose independent | sin | 20 | NA |
| 396 | 91.54 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 431 | 91.90 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 432 | 91.91 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 1 | 8 |
| 433 | 91.95 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 435 | 91.95 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 437 | 91.95 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 488 | 91.95 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 490 | 91.95 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 492 | 91.95 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 551 | 92.06 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 554 | 92.08 | humidity | 90.0 | 720 | > th | dose dependent | sin | 18 | NA |
| 643 | 92.59 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 659 | 92.63 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 663 | 92.65 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 707 | 92.87 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 770 | 93.08 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 1 | 8 |
| 771 | 93.08 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 772 | 93.09 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 777 | 93.11 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 798 | 93.15 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 813 | 93.22 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 19 | 22 |
| 835 | 93.33 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 845 | 93.37 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 2 | 15 |
| 869 | 93.40 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 898 | 93.47 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 905 | 93.50 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 17 | 16 |
| 912 | 93.52 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 921 | 93.54 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 977 | 93.78 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 999 | 93.84 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 9 |
