BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0695300 Os01g0695300|AK099451
         (307 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0695300  Similar to Farnesyl pyrophosphate synthetase (...   630   0.0  
Os01g0703400  Similar to Farnesyl pyrophosphate synthetase (...   488   e-138
Os05g0543400  Similar to Farnesyl diphosphate synthase (Frag...   465   e-131
Os04g0657300  Similar to Farnesyl diphosphate synthase (Frag...   400   e-112
Os04g0657100  Similar to Farnesyl diphosphate synthase (Frag...   365   e-101

>Os01g0695300 Similar to Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)
           (Farnesyl diphosphate synthetase) [Includes:
           Dimethylallyltranstransferase (EC 2.5.1.1)
          Length = 307

 Score =  630 bits (1624), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/307 (100%), Positives = 307/307 (100%)

Query: 1   MLDYNVLGGKLNRGLAVVESYKILKAASATEPSEEELFLACILGWGIEWLQAYFLVLDDI 60
           MLDYNVLGGKLNRGLAVVESYKILKAASATEPSEEELFLACILGWGIEWLQAYFLVLDDI
Sbjct: 1   MLDYNVLGGKLNRGLAVVESYKILKAASATEPSEEELFLACILGWGIEWLQAYFLVLDDI 60

Query: 61  MDNSQTRRGKPCWFRLPKVGLIAINDGLVLRSQISRIFRRYFRGKSYYVDLLDLFNEVEI 120
           MDNSQTRRGKPCWFRLPKVGLIAINDGLVLRSQISRIFRRYFRGKSYYVDLLDLFNEVEI
Sbjct: 61  MDNSQTRRGKPCWFRLPKVGLIAINDGLVLRSQISRIFRRYFRGKSYYVDLLDLFNEVEI 120

Query: 121 QTTSGQLLDQITTNEGRKDLNKYNVHVYRRIVEYKTAYYSFYLPVACALLLFDESLDNYA 180
           QTTSGQLLDQITTNEGRKDLNKYNVHVYRRIVEYKTAYYSFYLPVACALLLFDESLDNYA
Sbjct: 121 QTTSGQLLDQITTNEGRKDLNKYNVHVYRRIVEYKTAYYSFYLPVACALLLFDESLDNYA 180

Query: 181 QVKHILVEMGVYFQSQDDYLDCFGEPEIIGKIGSDIEDFKCSWLFVQALERADEKQKGVL 240
           QVKHILVEMGVYFQSQDDYLDCFGEPEIIGKIGSDIEDFKCSWLFVQALERADEKQKGVL
Sbjct: 181 QVKHILVEMGVYFQSQDDYLDCFGEPEIIGKIGSDIEDFKCSWLFVQALERADEKQKGVL 240

Query: 241 FENYGKSDPACVAKVKDLYNELHLQRVFSEYERESYEKLISAIEAQPNEAVRAVLKSFLH 300
           FENYGKSDPACVAKVKDLYNELHLQRVFSEYERESYEKLISAIEAQPNEAVRAVLKSFLH
Sbjct: 241 FENYGKSDPACVAKVKDLYNELHLQRVFSEYERESYEKLISAIEAQPNEAVRAVLKSFLH 300

Query: 301 KIYKRSK 307
           KIYKRSK
Sbjct: 301 KIYKRSK 307



>Os01g0703400 Similar to Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)
           (Farnesyl diphosphate synthetase) [Includes:
           Dimethylallyltranstransferase (EC 2.5.1.1)
          Length = 353

 Score =  488 bits (1257), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 230/307 (74%), Positives = 267/307 (86%), Gaps = 2/307 (0%)

Query: 1   MLDYNVLGGKLNRGLAVVESYKILKAASATEPSEEELFLACILGWGIEWLQAYFLVLDDI 60
           MLDYNVLGGK NRG++V++S+K+LK       ++EE FLAC LGW IEWLQAYFLVLDDI
Sbjct: 49  MLDYNVLGGKCNRGISVIDSFKMLKGTDVL--NKEETFLACTLGWCIEWLQAYFLVLDDI 106

Query: 61  MDNSQTRRGKPCWFRLPKVGLIAINDGLVLRSQISRIFRRYFRGKSYYVDLLDLFNEVEI 120
           MDNSQTRRG+PCWFR+P+VGLIA+NDG++LR+ ISRI +R+F+GK YYVDL+DLFNEVE 
Sbjct: 107 MDNSQTRRGQPCWFRVPQVGLIAVNDGIILRNHISRILQRHFKGKLYYVDLIDLFNEVEF 166

Query: 121 QTTSGQLLDQITTNEGRKDLNKYNVHVYRRIVEYKTAYYSFYLPVACALLLFDESLDNYA 180
           +T SGQLLD ITT+EG KDL KYN+ V+RRIV+YKTAYYSFYLPVACALLL  E+LDN+ 
Sbjct: 167 KTASGQLLDLITTHEGEKDLTKYNLTVHRRIVQYKTAYYSFYLPVACALLLSGENLDNFG 226

Query: 181 QVKHILVEMGVYFQSQDDYLDCFGEPEIIGKIGSDIEDFKCSWLFVQALERADEKQKGVL 240
            VK+ILVEMG YFQ QDDYLDC+G+PE IGKIG+DIED+KCSWL VQALERADE QK +L
Sbjct: 227 DVKNILVEMGTYFQVQDDYLDCYGDPEFIGKIGTDIEDYKCSWLVVQALERADENQKHIL 286

Query: 241 FENYGKSDPACVAKVKDLYNELHLQRVFSEYERESYEKLISAIEAQPNEAVRAVLKSFLH 300
           FENYGK DP CVAKVKDLY EL+L+ VF EYERESY KLI+ IEA PN+AV+ VLKSFLH
Sbjct: 287 FENYGKPDPECVAKVKDLYKELNLEAVFHEYERESYNKLIADIEAHPNKAVQNVLKSFLH 346

Query: 301 KIYKRSK 307
           KIYKR K
Sbjct: 347 KIYKRQK 353



>Os05g0543400 Similar to Farnesyl diphosphate synthase (Fragment)
          Length = 355

 Score =  465 bits (1196), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 222/307 (72%), Positives = 261/307 (85%), Gaps = 2/307 (0%)

Query: 1   MLDYNVLGGKLNRGLAVVESYKILKAASATEPSEEELFLACILGWGIEWLQAYFLVLDDI 60
           MLDYNV GGK NRGL+VV+SYK+LK  +    S+E++FLA  LGW +EWLQAYFLVLDDI
Sbjct: 51  MLDYNVPGGKCNRGLSVVDSYKLLKGTNVL--SQEDMFLASTLGWCVEWLQAYFLVLDDI 108

Query: 61  MDNSQTRRGKPCWFRLPKVGLIAINDGLVLRSQISRIFRRYFRGKSYYVDLLDLFNEVEI 120
           MD+S TRRG+PCWFR+P+VG IAINDG++LR+ I+R+ R +FRGK YY DLLDLFNEVE 
Sbjct: 109 MDDSHTRRGQPCWFRVPQVGSIAINDGIILRNHITRMLRLHFRGKLYYADLLDLFNEVEF 168

Query: 121 QTTSGQLLDQITTNEGRKDLNKYNVHVYRRIVEYKTAYYSFYLPVACALLLFDESLDNYA 180
           +T SGQLLD ITT+EG KDLNKYN+ V+RRIV+YKT+YYSFYLPVACALLL  E L  Y 
Sbjct: 169 KTASGQLLDLITTHEGEKDLNKYNIGVHRRIVQYKTSYYSFYLPVACALLLSGEDLTKYG 228

Query: 181 QVKHILVEMGVYFQSQDDYLDCFGEPEIIGKIGSDIEDFKCSWLFVQALERADEKQKGVL 240
            V+ ILV+MG+YFQ QDDYLDC+G+P+ IGKIG+DIED+KCSWL VQALERADE QK VL
Sbjct: 229 AVEDILVKMGIYFQVQDDYLDCYGDPKFIGKIGTDIEDYKCSWLVVQALERADESQKSVL 288

Query: 241 FENYGKSDPACVAKVKDLYNELHLQRVFSEYERESYEKLISAIEAQPNEAVRAVLKSFLH 300
           FENYGK DPACVAKVK LY EL+L+ VF +YE ESY+KLI+ IEAQP+ AV+ VLKSFLH
Sbjct: 289 FENYGKKDPACVAKVKSLYRELNLEAVFLDYENESYKKLIADIEAQPSIAVQNVLKSFLH 348

Query: 301 KIYKRSK 307
           KIYKR K
Sbjct: 349 KIYKRQK 355



>Os04g0657300 Similar to Farnesyl diphosphate synthase (Fragment)
          Length = 407

 Score =  400 bits (1028), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 183/307 (59%), Positives = 243/307 (79%), Gaps = 2/307 (0%)

Query: 1   MLDYNVLGGKLNRGLAVVESYKILKAASATEPSEEELFLACILGWGIEWLQAYFLVLDDI 60
           M+DYNV GGKLNRGL+VV+SY +L+    TE  +E+ +LAC+LGW +EWLQA  LVLDDI
Sbjct: 103 MMDYNVPGGKLNRGLSVVDSYMLLR--QGTEVDDEDFYLACVLGWCVEWLQASALVLDDI 160

Query: 61  MDNSQTRRGKPCWFRLPKVGLIAINDGLVLRSQISRIFRRYFRGKSYYVDLLDLFNEVEI 120
            DN+ TRR   CW++LP VG+ AINDG++L+  +  I +RYF+ K Y++DL++L+NE+ +
Sbjct: 161 TDNAYTRRDNLCWYKLPTVGMSAINDGVLLKCHVQAIIKRYFKEKFYFLDLMELWNEIGL 220

Query: 121 QTTSGQLLDQITTNEGRKDLNKYNVHVYRRIVEYKTAYYSFYLPVACALLLFDESLDNYA 180
           QT  GQ+LD ITT+ G KDL +Y +  YRRIV+YKT+YYSFYLPVACALLL    L +Y 
Sbjct: 221 QTAMGQMLDLITTHTGAKDLARYRIQGYRRIVKYKTSYYSFYLPVACALLLNGARLSDYV 280

Query: 181 QVKHILVEMGVYFQSQDDYLDCFGEPEIIGKIGSDIEDFKCSWLFVQALERADEKQKGVL 240
           ++K++L+EMGVYFQ QDDYLDCFG+PE+IGK+G+DIED+KCSWL VQA+E A+E +  +L
Sbjct: 281 ELKNVLIEMGVYFQIQDDYLDCFGDPEVIGKVGTDIEDYKCSWLIVQAMELANENEMKIL 340

Query: 241 FENYGKSDPACVAKVKDLYNELHLQRVFSEYERESYEKLISAIEAQPNEAVRAVLKSFLH 300
           +ENYGKSDP CVA+VK +Y EL LQ +F EYE   Y+ L+S I+A+ + A+R +LKSFL 
Sbjct: 341 YENYGKSDPKCVAEVKSVYRELDLQDIFLEYESRVYKHLVSTIDAETDRAIRDILKSFLK 400

Query: 301 KIYKRSK 307
           KIY+R K
Sbjct: 401 KIYRRKK 407



>Os04g0657100 Similar to Farnesyl diphosphate synthase (Fragment)
          Length = 392

 Score =  365 bits (938), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/307 (56%), Positives = 232/307 (75%), Gaps = 2/307 (0%)

Query: 1   MLDYNVLGGKLNRGLAVVESYKILKAASATEPSEEELFLACILGWGIEWLQAYFLVLDDI 60
           M+DYNV GGKLNRGL+V++SY +LK  S  E +E++ FLAC+LGW +EW QA  L+LDDI
Sbjct: 88  MIDYNVPGGKLNRGLSVIDSYLLLKQGS--EVTEDDFFLACVLGWCVEWFQACALLLDDI 145

Query: 61  MDNSQTRRGKPCWFRLPKVGLIAINDGLVLRSQISRIFRRYFRGKSYYVDLLDLFNEVEI 120
           MD+S TRR + CW+R P+VGL  INDG++L+  I  + ++YFR K Y++D+L++++E+ +
Sbjct: 146 MDDSHTRRDQICWYRRPEVGLRGINDGIILKCHILIMIKKYFREKPYFLDILEIWSEIAL 205

Query: 121 QTTSGQLLDQITTNEGRKDLNKYNVHVYRRIVEYKTAYYSFYLPVACALLLFDESLDNYA 180
           QT+ GQ+LD I+T+ G  DL KY++  YRRIV+YKTAYYSFYLPVA ALLL    L++++
Sbjct: 206 QTSLGQMLDLISTHTGADDLAKYSIEGYRRIVKYKTAYYSFYLPVANALLLSGAKLEDFS 265

Query: 181 QVKHILVEMGVYFQSQDDYLDCFGEPEIIGKIGSDIEDFKCSWLFVQALERADEKQKGVL 240
            +K IL+EMG+YFQ QDDYLDCF +P  IGKIG+DIED KCSWL VQAL  AD  Q  VL
Sbjct: 266 GLKDILIEMGIYFQIQDDYLDCFADPNTIGKIGTDIEDHKCSWLIVQALGHADNNQIEVL 325

Query: 241 FENYGKSDPACVAKVKDLYNELHLQRVFSEYERESYEKLISAIEAQPNEAVRAVLKSFLH 300
             NYGK D + V++VK  Y  L L+ +FSE+ER  Y  L+++IEAQ + A R +L SFL 
Sbjct: 326 HRNYGKKDSSSVSEVKRTYAALDLKDIFSEFERRCYNHLVTSIEAQKDHAAREILISFLK 385

Query: 301 KIYKRSK 307
           KI++R K
Sbjct: 386 KIHQRKK 392



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,739,661
Number of extensions: 395576
Number of successful extensions: 808
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 804
Number of HSP's successfully gapped: 5
Length of query: 307
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 206
Effective length of database: 11,762,187
Effective search space: 2423010522
Effective search space used: 2423010522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)