BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0543300 Os05g0543300|AK103378
(320 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0543300 WD40-like domain containing protein 666 0.0
Os07g0589400 Quinonprotein alcohol dehydrogenase-like domai... 288 3e-78
Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3... 77 2e-14
Os07g0572000 WD40-like domain containing protein 68 1e-11
>Os05g0543300 WD40-like domain containing protein
Length = 320
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MAATLSQLDDGIVRGMAIGAVFTDYAGKINCLDFHRKEDLLVTSSEDDSIRLYNITSATL 60
MAATLSQLDDGIVRGMAIGAVFTDYAGKINCLDFHRKEDLLVTSSEDDSIRLYNITSATL
Sbjct: 1 MAATLSQLDDGIVRGMAIGAVFTDYAGKINCLDFHRKEDLLVTSSEDDSIRLYNITSATL 60
Query: 61 LKTTYHRKHGADRVCFTHHPSSILCSSRYNLESAESLRYLSLYDNRCLRYFKGHKDRVVS 120
LKTTYHRKHGADRVCFTHHPSSILCSSRYNLESAESLRYLSLYDNRCLRYFKGHKDRVVS
Sbjct: 61 LKTTYHRKHGADRVCFTHHPSSILCSSRYNLESAESLRYLSLYDNRCLRYFKGHKDRVVS 120
Query: 121 LCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPSVAYDQQGLVFAVAMEGGAIK 180
LCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPSVAYDQQGLVFAVAMEGGAIK
Sbjct: 121 LCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPSVAYDQQGLVFAVAMEGGAIK 180
Query: 181 LFDSRSYDKGPFDTFLVGGDTAEVSDIKFSNDGKSMLLTTTNNHIYVLDAYGGDKRCGFS 240
LFDSRSYDKGPFDTFLVGGDTAEVSDIKFSNDGKSMLLTTTNNHIYVLDAYGGDKRCGFS
Sbjct: 181 LFDSRSYDKGPFDTFLVGGDTAEVSDIKFSNDGKSMLLTTTNNHIYVLDAYGGDKRCGFS 240
Query: 241 LESSPNVATEAAFTPDGQYVISGSGDGTLHAWNINTIQEIACWNSHIGPITALKWAPRRA 300
LESSPNVATEAAFTPDGQYVISGSGDGTLHAWNINTIQEIACWNSHIGPITALKWAPRRA
Sbjct: 241 LESSPNVATEAAFTPDGQYVISGSGDGTLHAWNINTIQEIACWNSHIGPITALKWAPRRA 300
Query: 301 MFATASTALTFWIPNNSSSN 320
MFATASTALTFWIPNNSSSN
Sbjct: 301 MFATASTALTFWIPNNSSSN 320
>Os07g0589400 Quinonprotein alcohol dehydrogenase-like domain containing protein
Length = 421
Score = 288 bits (738), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 144/311 (46%), Positives = 217/311 (69%), Gaps = 6/311 (1%)
Query: 7 QLDDGIVRGMAIGAVFTDYAGKINCLDFHRKE-DLLVTSSEDDSIRLYNITSATLLKTTY 65
++ D + + M +G F DY G+I+ +DFH K + LVT+ +D+SIRLY+I +A LKT
Sbjct: 104 EVTDEMFKCMEVGLAFRDYNGRISSMDFHSKATNYLVTACDDESIRLYDIQNAVCLKTIN 163
Query: 66 HRKHGADRVCFTHHPSSILCSSRYNLESAESLRYLSLYDNRCLRYFKGHKDRVVSLCMSP 125
+K+G + VCFT +P+ +L SS+ + +SLR LSL +N LRYFKGH DRVVS+ +
Sbjct: 164 SKKYGVELVCFTENPTYVLHSSKNGWD--DSLRLLSLVNNCFLRYFKGHLDRVVSISLCS 221
Query: 126 VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPSVAYDQQGLVFAVAMEGGAIKLFDSR 185
N + +SGSLD +V +WD RV QG+LR++GRP+V+YD QGLVFA+A GG I++FD+R
Sbjct: 222 ENGNILSGSLDRTVLLWDSRVEKAQGLLRVQGRPAVSYDDQGLVFAIAY-GGYIRMFDAR 280
Query: 186 SYDKGPFDTFLVGGDTAEVSDIKFSNDGKSMLLTTTNNHIYVLDAYGGDKRCGFSLES-S 244
+++KGPFD F VG D +E + IKFS+DG+ +LLTT ++VLD++ G+ ++++
Sbjct: 281 NFEKGPFDIFSVGNDDSEANVIKFSSDGRRLLLTTKAGRVHVLDSFHGNNIATYNVKPVV 340
Query: 245 PNVATEAAFTPDGQYVISGSGDGTLHAWNINTIQEIACWNSHIGPITALKWAPRRAMFAT 304
N EA+F+PDG ++ISGSGDG+++AWN+ + ++A W S ++WAP MF T
Sbjct: 341 SNSTLEASFSPDGNHIISGSGDGSVYAWNVRS-GKVARWGSTDSEPPLIRWAPGSLMFLT 399
Query: 305 ASTALTFWIPN 315
AS+ L+ W+P+
Sbjct: 400 ASSELSCWVPD 410
>Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3-kb gene protein)
(WD-repeat protein BIG-3)
Length = 324
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 129/305 (42%), Gaps = 25/305 (8%)
Query: 15 GMAIGAVFTDYAGKINCLDFHRKEDLLVTSSEDDSIRLYNITSATLLKTTYHRKHGADRV 74
G A+ A + ++ + F LL ++S D +R+++ TS HG
Sbjct: 8 GYALRATLAGHRRAVSAVKFSPDGRLLASASADKLLRVWS-TSDLASPVAELAGHGEGVS 66
Query: 75 CFTHHPSSILCSSRYNLESAESLRYLSLYD------------NRCLRYFKGHKDRVVSLC 122
P L + SA R + ++D R ++ GH + L
Sbjct: 67 DLAFSPDGRL------IASASDDRTVRIWDLGDGGGGGGGGEPRLMKTLSGHTNYAFCLA 120
Query: 123 MSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--SVAYDQQGLVFAVAMEGGAIK 180
SP + SGS D +VR+W++R C +L P SV +++ G + G +
Sbjct: 121 FSPHGNMLASGSFDETVRVWEVRSGRCLRVLPAHSEPVTSVDFNRDGAMIVSGSYDGLCR 180
Query: 181 LFDSRSYDKGPFDTFLVGGDTAEVSDIKFSNDGKSMLLTTTNNHIYVLDAYGGDKRCGFS 240
++DS + G L+ ++ VS KFS +GK +L T ++ + + + G ++
Sbjct: 181 IWDSAT---GHCIKTLIDDESPPVSFAKFSPNGKFVLAATLDSKLRLWNFSAGKFLKTYT 237
Query: 241 LESSPNVATEAAFT-PDGQYVISGSGDGTLHAWNINTIQEIACWNSHIGPITALKWAPRR 299
+ AAF+ +G+Y++SGS D ++ W++ + + + H + A+ P
Sbjct: 238 GHVNTKYCIPAAFSITNGKYIVSGSEDKCVYIWDLQSRKILQKLEGHTDTVIAVSCHPNE 297
Query: 300 AMFAT 304
M A+
Sbjct: 298 NMIAS 302
>Os07g0572000 WD40-like domain containing protein
Length = 338
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 125/291 (42%), Gaps = 44/291 (15%)
Query: 23 TDYAGKINCLDFHRKEDLLVTSSEDDSIRLYNITSATLLKTTYHRKHGADRVCFTHHPSS 82
T ++ ++C+ F LL T+S D ++ L + +S + T G + ++
Sbjct: 22 TPHSRAVSCVRFSPCGRLLATASLDGTVALLSPSSLAAIATLRGHADGVSDISWS----- 76
Query: 83 ILCSSRYNLESAESLRYLSLYD--------------------------NRCLRYFKGHKD 116
+ + L SA R L ++D +RC+R KGH +
Sbjct: 77 ---TDSFYLCSASDDRTLRIWDVRPVLAGLNPGSGGGGGGAQPADPNADRCIRVLKGHTN 133
Query: 117 RVVSLCMSP-VNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--SVAYDQQGLVFAVA 173
V S +P N + SG D +VRIWD++ C + P SV + + G +
Sbjct: 134 FVFSANFNPQTNSTVASGGFDCTVRIWDVKSGRCVRAIDAHSEPVTSVHFIRDGSIIVSG 193
Query: 174 MEGGAIKLFDSRSYDKGPFDTFLVGGDTAEVSDIKFSNDGKSMLLTTTNNHIYVLDAYGG 233
G K++D+ + G ++ VS FS +GK +L+ ++ + + + G
Sbjct: 194 SHDGTCKIWDAGT---GSCLKTVIDEKKPAVSFSMFSPNGKFILVAALDDTLKLCNFASG 250
Query: 234 DKRCGFSLESSPNVATEAAFT-PDGQYVISGSGDGTLHAWNI---NTIQEI 280
+S + ++AF+ +G+Y++SGS D ++ W++ N +Q++
Sbjct: 251 KFLKMYSGHVNRKYCLQSAFSVTNGKYIVSGSEDNCVYIWDLQGKNILQKL 301
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,330,691
Number of extensions: 486073
Number of successful extensions: 1930
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1939
Number of HSP's successfully gapped: 4
Length of query: 320
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 219
Effective length of database: 11,762,187
Effective search space: 2575918953
Effective search space used: 2575918953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)