Os05g0543300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os05g0543300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.17 | 0.195 | 10.7 | -0.0528 | 0.444 | -0.375 | -0.575 | 0.208 | 0.0344 | 21.1 | 25.3 | 5566 | -- | -- |
| 17.04 | 0.192 | 10.7 | -0.105 | 0.429 | -0.329 | -0.593 | -- | 0.0575 | 21.1 | 25.4 | 8569 | -- | -- |
| 18.32 | 0.199 | 10.7 | -0.0382 | 0.441 | -0.372 | -- | 0.184 | 0.034 | 21.1 | 25.3 | 5647 | -- | -- |
| 18.21 | 0.199 | 10.7 | -0.0844 | 0.436 | -0.341 | -- | -- | 0.0571 | 21.1 | 25.1 | 8462 | -- | -- |
| 29.08 | 0.251 | 10.7 | -0.0287 | -- | -0.337 | -- | 0.185 | 0.0676 | -- | 25.2 | 8626 | -- | -- |
| 21.36 | 0.217 | 10.8 | -0.277 | 0.429 | -- | -0.601 | -- | -0.058 | 20.9 | -- | -- | -- | -- |
| 22.58 | 0.223 | 10.8 | -0.257 | 0.431 | -- | -- | -- | -0.0576 | 20.8 | -- | -- | -- | -- |
| 29.08 | 0.251 | 10.7 | -0.0689 | -- | -0.356 | -- | -- | 0.0656 | -- | 24.84 | 10177 | -- | -- |
| 18.35 | 0.199 | 10.7 | -- | 0.442 | -0.373 | -- | -- | 0.0693 | 21.1 | 24.9 | 9729 | -- | -- |
| 33.17 | 0.269 | 10.7 | -0.257 | -- | -- | -- | -- | -0.0607 | -- | -- | -- | -- | -- |
| 24.32 | 0.231 | 10.7 | -- | 0.432 | -- | -- | -- | -0.029 | 20.8 | -- | -- | -- | -- |
| 29.18 | 0.252 | 10.7 | -- | -- | -0.381 | -- | -- | 0.0832 | -- | 24.79 | 10201 | -- | -- |
| 34.9 | 0.276 | 10.7 | -- | -- | -- | -- | -- | -0.0322 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.11 | temperature | 20 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 2 | 17.13 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 3 | 17.13 | temperature | 20 | 43200 | > th | dose independent | rect. | 10 | 12 |
| 5 | 17.14 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 9 | 17.14 | temperature | 20 | 43200 | < th | dose independent | rect. | 10 | 12 |
| 11 | 17.14 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 9 |
| 17 | 17.16 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 18 | 17.16 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 31 | 17.17 | temperature | 20 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 51 | 17.18 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 14 |
| 90 | 17.20 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 92 | 17.21 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 105 | 17.21 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 138 | 17.23 | temperature | 20 | 43200 | > th | dose independent | sin | 20 | NA |
| 139 | 17.23 | temperature | 20 | 43200 | < th | dose independent | sin | 20 | NA |
| 153 | 17.23 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 14 |
| 164 | 17.24 | temperature | 25 | 4320 | > th | dose independent | sin | 8 | NA |
| 218 | 17.26 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 337 | 17.29 | temperature | 20 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 344 | 17.30 | temperature | 25 | 4320 | < th | dose independent | sin | 8 | NA |
| 391 | 17.31 | temperature | 20 | 270 | > th | dose dependent | sin | 10 | NA |
| 431 | 17.32 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 454 | 17.33 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 13 |
| 467 | 17.33 | temperature | 25 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 597 | 17.36 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 666 | 17.37 | temperature | 20 | 43200 | < th | dose dependent | rect. | 7 | 19 |
| 725 | 17.38 | temperature | 20 | 43200 | < th | dose dependent | sin | 16 | NA |
| 757 | 17.39 | temperature | 20 | 43200 | > th | dose independent | no | NA | NA |
| 760 | 17.39 | temperature | 20 | 43200 | < th | dose independent | no | NA | NA |
| 766 | 17.39 | temperature | 20 | 43200 | > th | dose independent | rect. | 7 | 8 |
| 768 | 17.39 | temperature | 20 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 937 | 17.40 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 938 | 17.40 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 944 | 17.40 | temperature | 20 | 43200 | < th | dose independent | rect. | 7 | 5 |