BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0521400 Os05g0521400|AK066592
(256 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0521400 Conserved hypothetical protein 495 e-140
Os02g0563800 Cyclin-like F-box domain containing protein 281 2e-76
Os05g0520000 208 2e-54
Os07g0269800 Cyclin-like F-box domain containing protein 184 7e-47
Os07g0268000 Cyclin-like F-box domain containing protein 183 1e-46
Os04g0589300 97 1e-20
Os12g0618150 76 2e-14
Os10g0484600 64 9e-11
>Os05g0521400 Conserved hypothetical protein
Length = 256
Score = 495 bits (1275), Expect = e-140, Method: Compositional matrix adjust.
Identities = 241/256 (94%), Positives = 241/256 (94%)
Query: 1 MGFCQVTQSHAVVGIFYYWKNYESHQYYLTCIIWSCSSQGQXXXXXXXXXXXXXXXSLDG 60
MGFCQVTQSHAVVGIFYYWKNYESHQYYLTCIIWSCSSQGQ SLDG
Sbjct: 1 MGFCQVTQSHAVVGIFYYWKNYESHQYYLTCIIWSCSSQGQPLPDPPLPVNDMPPVSLDG 60
Query: 61 VLYWMSEPRLGQSYERAIVFFNIAAKIFDVIPCPSCIAIWDSRNPCHAFVVELQGMLCAV 120
VLYWMSEPRLGQSYERAIVFFNIAAKIFDVIPCPSCIAIWDSRNPCHAFVVELQGMLCAV
Sbjct: 61 VLYWMSEPRLGQSYERAIVFFNIAAKIFDVIPCPSCIAIWDSRNPCHAFVVELQGMLCAV 120
Query: 121 LSNPVADKLDIWKWDHGLWSIAYAINLKFWPDYSLATNVVVPLAVDPIDGKVLLNTGRKL 180
LSNPVADKLDIWKWDHGLWSIAYAINLKFWPDYSLATNVVVPLAVDPIDGKVLLNTGRKL
Sbjct: 121 LSNPVADKLDIWKWDHGLWSIAYAINLKFWPDYSLATNVVVPLAVDPIDGKVLLNTGRKL 180
Query: 181 GLYNPCEQTIENLHLIRRRSNRTLELTEISTLPDAKMFLRSSLSGNYYWLRARSLLTLQV 240
GLYNPCEQTIENLHLIRRRSNRTLELTEISTLPDAKMFLRSSLSGNYYWLRARSLLTLQV
Sbjct: 181 GLYNPCEQTIENLHLIRRRSNRTLELTEISTLPDAKMFLRSSLSGNYYWLRARSLLTLQV 240
Query: 241 LHQGRIHFTPETNLRS 256
LHQGRIHFTPETNLRS
Sbjct: 241 LHQGRIHFTPETNLRS 256
>Os02g0563800 Cyclin-like F-box domain containing protein
Length = 883
Score = 281 bits (720), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/194 (70%), Positives = 153/194 (78%), Gaps = 1/194 (0%)
Query: 1 MGFCQVTQSHAVVGIFYYWKNYESHQYYLTCIIWSCSSQ-GQXXXXXXXXXXXXXXXSLD 59
+GF QV Q H VVGIFY K+Y S +Y LTC +WSC S + S+D
Sbjct: 585 LGFSQVIQDHVVVGIFYDRKDYNSREYSLTCSLWSCGSGYFEQLPQPPLPVNDMPPVSVD 644
Query: 60 GVLYWMSEPRLGQSYERAIVFFNIAAKIFDVIPCPSCIAIWDSRNPCHAFVVELQGMLCA 119
GVLYWMSEPRLGQSYERAIV F+IAAKIF+VIPCPS IA+WD R+ CHAFVVEL G LCA
Sbjct: 645 GVLYWMSEPRLGQSYERAIVSFDIAAKIFEVIPCPSSIAMWDPRSRCHAFVVELLGKLCA 704
Query: 120 VLSNPVADKLDIWKWDHGLWSIAYAINLKFWPDYSLATNVVVPLAVDPIDGKVLLNTGRK 179
VLSN VAD+LDIWKWDHGLW+ AY INLKFWPDYSLATNVVVP+AVD DG++LLNTGRK
Sbjct: 705 VLSNSVADELDIWKWDHGLWTRAYTINLKFWPDYSLATNVVVPMAVDLTDGRILLNTGRK 764
Query: 180 LGLYNPCEQTIENL 193
LGLYNP +QTIENL
Sbjct: 765 LGLYNPFDQTIENL 778
>Os05g0520000
Length = 263
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 102/145 (70%), Positives = 118/145 (81%), Gaps = 6/145 (4%)
Query: 85 AKIFDVIPCPSCIAIWDSRNPCHAFVVELQGMLCAVLSNPVADKLDIWKWDHGLWSIAYA 144
++IFDVIPCPSCIA+WD+ + CHAFVVELQ MLC VLS+PVAD+LDIWKWDHGLW+ AY
Sbjct: 118 SQIFDVIPCPSCIAMWDNESRCHAFVVELQRMLCVVLSDPVADELDIWKWDHGLWTRAYT 177
Query: 145 INLKFWPDYSLATNVVVPLAVDPIDGKVLLNTGRKLGLYNPCEQTIENLHLIRRRSNRTL 204
INLK WPD+SLATNVVVPLAVDPIDG+VLLNTGRKLGLYNP Q IENL+ + + S TL
Sbjct: 178 INLKLWPDFSLATNVVVPLAVDPIDGRVLLNTGRKLGLYNPFNQAIENLYALDQASLMTL 237
Query: 205 ELTE------ISTLPDAKMFLRSSL 223
+ ++ S LPD MFL SSL
Sbjct: 238 KCSDGALEFVRSALPDVGMFLASSL 262
>Os07g0269800 Cyclin-like F-box domain containing protein
Length = 754
Score = 184 bits (466), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 85/137 (62%), Positives = 102/137 (74%)
Query: 58 LDGVLYWMSEPRLGQSYERAIVFFNIAAKIFDVIPCPSCIAIWDSRNPCHAFVVELQGML 117
L G LYWMSEPRL QS AI+ F IA K F VI CPSC +R+PC +FVVEL+GML
Sbjct: 595 LAGFLYWMSEPRLSQSKTSAILSFEIATKTFVVIQCPSCALTRHNRSPCESFVVELEGML 654
Query: 118 CAVLSNPVADKLDIWKWDHGLWSIAYAINLKFWPDYSLATNVVVPLAVDPIDGKVLLNTG 177
C VL+NP ++LDIWK +HG W AY + LK WP YSL NVVVP+AVDP DG++LLNTG
Sbjct: 655 CVVLANPFEEELDIWKMEHGQWDRAYRVCLKGWPGYSLGANVVVPMAVDPKDGRILLNTG 714
Query: 178 RKLGLYNPCEQTIENLH 194
KLGLY+P ++ IENL+
Sbjct: 715 SKLGLYDPTKRVIENLY 731
>Os07g0268000 Cyclin-like F-box domain containing protein
Length = 738
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 85/137 (62%), Positives = 102/137 (74%)
Query: 58 LDGVLYWMSEPRLGQSYERAIVFFNIAAKIFDVIPCPSCIAIWDSRNPCHAFVVELQGML 117
L G LYWMSEPRL QS AI+ F IA K F VI CPSC +R+PC +FVVEL+GML
Sbjct: 579 LAGFLYWMSEPRLSQSKTSAILSFEIATKTFVVIQCPSCALTRHNRSPCKSFVVELEGML 638
Query: 118 CAVLSNPVADKLDIWKWDHGLWSIAYAINLKFWPDYSLATNVVVPLAVDPIDGKVLLNTG 177
C VL+NP ++LDIWK +HG W AY + LK WP YSL NVVVP+AVDP DG++LLNTG
Sbjct: 639 CVVLANPFEEELDIWKMEHGQWDRAYRVCLKGWPGYSLGANVVVPMAVDPKDGRILLNTG 698
Query: 178 RKLGLYNPCEQTIENLH 194
KLGLY+P ++ IENL+
Sbjct: 699 SKLGLYDPTKRVIENLY 715
>Os04g0589300
Length = 1526
Score = 96.7 bits (239), Expect = 1e-20, Method: Composition-based stats.
Identities = 64/203 (31%), Positives = 110/203 (54%), Gaps = 19/203 (9%)
Query: 1 MGFCQVTQSHAVVGIFYYWKNYESHQYYLTCI-IWSCSSQGQXXXXXXXXXXXXXXXSLD 59
+GF +++Q H VV + + + + +C+ WSC+ + +D
Sbjct: 1130 LGFDRLSQEHVVVEMSRFKGDLQLCMIKTSCVDYWSCAGK------PPRPVTDMPPAHVD 1183
Query: 60 GVLYWMSEPRLGQSYERAIVFFNIAAKIFDVIPCPSCIAIWDSRNPCHAFVVELQGMLCA 119
G LYW+SEP+ + +R IV F+I+++ F V+PC C + D + + +VEL+G L
Sbjct: 1184 GTLYWISEPQ-PTARDRVIVAFDISSREFSVLPCQPCCSERDGGD--YPLLVELEGSLSL 1240
Query: 120 VLSNPVADKLDIWKWDH--GLWSIAYAINL-KFWPDYSLATNVVVPLAVDPI-----DGK 171
V++N + L IW G W +Y+I L + +PD+SL T VVV + +D + G+
Sbjct: 1241 VVANAEENNLQIWTMQEADGTWHKSYSILLDERYPDFSLKTGVVV-VPLDAVADSNGGGR 1299
Query: 172 VLLNTGRKLGLYNPCEQTIENLH 194
+LL+TGR LG Y+ ++I+ L+
Sbjct: 1300 ILLDTGRALGYYDLETRSIDTLY 1322
>Os12g0618150
Length = 756
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 72/139 (51%), Gaps = 16/139 (11%)
Query: 60 GVLYWMSEPR-LGQSYERAIVFFNIAAKIFDVIPCPSCIAIWDSRNPCHAFVVELQGMLC 118
G ++WM E R LG I+ F+++ FD +P P A+ D+ A + L G LC
Sbjct: 598 GKMHWMGEQRRLG------ILVFDVSTMAFDTMPAPP--ALPDAGG---AVLATLAGKLC 646
Query: 119 AVLSNPVADKLDIWK---WDHGLWSIAYAINLKFWPDYS-LATNVVVPLAVDPIDGKVLL 174
S + + IW D G W + I+L WP +S A +VVP+AVD DG+VLL
Sbjct: 647 VAHSCRETETMSIWAKSAGDEGEWETLHVIDLARWPAFSPRAAELVVPMAVDGRDGRVLL 706
Query: 175 NTGRKLGLYNPCEQTIENL 193
+ G+ LG Y+ T+E +
Sbjct: 707 DAGKALGYYDARSTTLETV 725
>Os10g0484600
Length = 724
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 32/161 (19%)
Query: 59 DGVLYWMSEPRLGQSYERA---------IVFFN----IAAKIFDVI---PCPSCIAIWDS 102
D +YW+ +P LG + +V + +A +DV+ P P C +
Sbjct: 538 DEEIYWLVDPALGPASATTTTPPTSACELVALDCRNAVARHHYDVVRGPPMPPCGRV--- 594
Query: 103 RNPCHAFVVELQGMLCAVLSNPVADKLDIWKWDHG----LWSIAYAINLK-FWPDYSLAT 157
V+ L G LC S+ A+ +D+W G +WS+ Y I L + P+Y+
Sbjct: 595 ------SVLRLHGALCVACSDRDANAIDVWAMQQGAGTAVWSMVYRIELAGYSPEYTSEK 648
Query: 158 NVVVPLAVDPIDGKVLLNTGRKLGLYNPCEQTIENLHLIRR 198
V + VDP G++LLNT + LG Y+P +E ++ +RR
Sbjct: 649 TTV--MGVDPTSGRILLNTEQSLGYYDPKTGELETIYRVRR 687
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.138 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,368,923
Number of extensions: 306931
Number of successful extensions: 703
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 694
Number of HSP's successfully gapped: 8
Length of query: 256
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 157
Effective length of database: 11,866,615
Effective search space: 1863058555
Effective search space used: 1863058555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)