Os02g0563800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os02g0563800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.44 | 0.202 | 10.7 | 1.23 | 1.06 | -0.132 | -0.403 | 1.24 | 0.263 | 5.5 | 19.5 | 2776 | -- | -- |
| 19.01 | 0.203 | 10.7 | 1.18 | 1.03 | -0.454 | -0.203 | -- | 0.251 | 5.49 | 12.7 | 44158 | -- | -- |
| 18.75 | 0.202 | 10.7 | 1.26 | 1.04 | -0.13 | -- | 1.32 | 0.27 | 5.51 | 19.5 | 3469 | -- | -- |
| 18.97 | 0.203 | 10.7 | 1.33 | 1.04 | -0.553 | -- | -- | 0.274 | 5.52 | 13.8 | 47520 | -- | -- |
| 75.71 | 0.405 | 10.7 | 1.3 | -- | -0.16 | -- | 1.29 | 0.311 | -- | 19.38 | 3469 | -- | -- |
| 23.17 | 0.226 | 10.7 | 0.866 | 1.05 | -- | -0.269 | -- | 0.142 | 5.53 | -- | -- | -- | -- |
| 23.35 | 0.226 | 10.7 | 0.865 | 1.04 | -- | -- | -- | 0.143 | 5.54 | -- | -- | -- | -- |
| 75.7 | 0.405 | 10.7 | 1.26 | -- | -0.539 | -- | -- | 0.268 | -- | 14.26 | 26329 | -- | -- |
| 29.74 | 0.254 | 10.8 | -- | 1.04 | 0.532 | -- | -- | -0.135 | 5.57 | 22.1 | 47520 | -- | -- |
| 80.04 | 0.418 | 10.7 | 0.899 | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
| 43.07 | 0.307 | 10.8 | -- | 1.06 | -- | -- | -- | 0.0472 | 5.51 | -- | -- | -- | -- |
| 86.16 | 0.432 | 10.8 | -- | -- | 0.571 | -- | -- | -0.13 | -- | 22.09 | 47520 | -- | -- |
| 101.37 | 0.47 | 10.8 | -- | -- | -- | -- | -- | 0.0691 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.52 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 2 | 17.53 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 9 | 17.58 | humidity | 90 | 14400 | > th | dose independent | sin | 12 | NA |
| 14 | 17.59 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 17 | 17.59 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 26 | 17.62 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 52 | 17.66 | humidity | 90 | 14400 | < th | dose independent | sin | 11 | NA |
| 55 | 17.66 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 59 | 17.66 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 12 |
| 85 | 17.70 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 90 | 17.71 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 176 | 17.81 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 221 | 17.86 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 295 | 17.95 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 391 | 18.05 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 11 |
| 509 | 18.15 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 519 | 18.16 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 539 | 18.16 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 581 | 18.20 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 582 | 18.20 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 610 | 18.21 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 611 | 18.22 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |
| 627 | 18.22 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 630 | 18.23 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 636 | 18.23 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 654 | 18.26 | humidity | 90 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 668 | 18.27 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 18 | NA |
| 683 | 18.29 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 697 | 18.29 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 698 | 18.29 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 699 | 18.29 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 8 |
| 700 | 18.29 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 702 | 18.30 | radiation | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 703 | 18.30 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 713 | 18.30 | humidity | 90 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 714 | 18.30 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 722 | 18.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 732 | 18.31 | radiation | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 764 | 18.32 | wind | 9 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 814 | 18.33 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 861 | 18.34 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 882 | 18.34 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 891 | 18.34 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 914 | 18.35 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 919 | 18.35 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 986 | 18.35 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 19 |
| 989 | 18.36 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 18 | NA |