Os07g0268000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os07g0268000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.82 | 0.412 | 6.12 | 1.1 | 1.06 | -0.378 | -0.642 | 1.37 | 0.446 | 5.84 | 10.15 | 4381 | -- | -- |
| 77.5 | 0.41 | 6.11 | 1.06 | 1.13 | -0.5 | -0.62 | -- | 0.456 | 5.83 | 10.55 | 4380 | -- | -- |
| 75.53 | 0.405 | 6.09 | 1.18 | 1.07 | -0.512 | -- | 1.89 | 0.528 | 6.07 | 10.51 | 4381 | -- | -- |
| 77.06 | 0.409 | 6.08 | 1.04 | 1.08 | -0.701 | -- | -- | 0.559 | 6.11 | 10.7 | 4381 | -- | -- |
| 126.08 | 0.523 | 6.09 | 1.3 | -- | -0.513 | -- | 1.72 | 0.72 | -- | 10.5 | 4763 | -- | -- |
| 87.53 | 0.439 | 6.12 | 1.09 | 1.02 | -- | -0.598 | -- | 0.365 | 5.47 | -- | -- | -- | -- |
| 88.39 | 0.44 | 6.12 | 1.09 | 1.02 | -- | -- | -- | 0.368 | 5.55 | -- | -- | -- | -- |
| 127.47 | 0.526 | 6.04 | 1.09 | -- | -0.715 | -- | -- | 0.792 | -- | 10.69 | 4763 | -- | -- |
| 107.39 | 0.483 | 6.08 | -- | 1.11 | -0.729 | -- | -- | 0.554 | 6.15 | 10.7 | 4382 | -- | -- |
| 142.01 | 0.557 | 6.13 | 1.12 | -- | -- | -- | -- | 0.393 | -- | -- | -- | -- | -- |
| 119.75 | 0.512 | 6.15 | -- | 1.03 | -- | -- | -- | 0.247 | 5.5 | -- | -- | -- | -- |
| 155.74 | 0.581 | 6.1 | -- | -- | -0.698 | -- | -- | 0.523 | -- | 9.84 | 4763 | -- | -- |
| 175.34 | 0.618 | 6.16 | -- | -- | -- | -- | -- | 0.268 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.95 | wind | 9 | 4320 | > th | dose dependent | rect. | 12 | 2 |
| 3 | 75.65 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 4 | 75.82 | wind | 9 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 24 | 78.07 | wind | 9 | 4320 | > th | dose dependent | rect. | 3 | 13 |
| 34 | 78.17 | wind | 9 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 49 | 78.40 | wind | 9 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 59 | 78.61 | wind | 9 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 91 | 78.93 | wind | 9 | 4320 | > th | dose independent | rect. | 23 | 17 |
| 94 | 78.94 | wind | 9 | 4320 | > th | dose independent | rect. | 3 | 13 |
| 128 | 79.33 | wind | 9 | 4320 | > th | dose dependent | rect. | 13 | 11 |
| 137 | 79.37 | wind | 9 | 4320 | > th | dose dependent | sin | 4 | NA |
| 140 | 79.39 | wind | 9 | 4320 | < th | dose independent | rect. | 3 | 13 |
| 142 | 79.41 | wind | 9 | 4320 | < th | dose independent | rect. | 1 | 15 |
| 148 | 79.43 | wind | 9 | 4320 | < th | dose independent | rect. | 23 | 17 |
| 167 | 79.54 | wind | 9 | 4320 | < th | dose independent | rect. | 6 | 10 |
| 176 | 79.58 | atmosphere | 995 | 30 | > th | dose independent | sin | 9 | NA |
| 179 | 79.59 | wind | 9 | 4320 | < th | dose independent | rect. | 8 | 8 |
| 200 | 79.72 | temperature | 30 | 10 | > th | dose independent | rect. | 17 | 2 |
| 222 | 79.74 | atmosphere | 995 | 30 | > th | dose independent | rect. | 13 | 23 |
| 234 | 79.83 | humidity | 70 | 30 | < th | dose independent | rect. | 18 | 1 |
| 260 | 79.86 | temperature | 30 | 90 | > th | dose dependent | rect. | 17 | 2 |
| 363 | 80.09 | wind | 3 | 720 | > th | dose independent | rect. | 2 | 1 |
| 366 | 80.12 | wind | 9 | 4320 | > th | dose independent | sin | 3 | NA |
| 389 | 80.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 1 |
| 396 | 80.25 | temperature | 30 | 10 | > th | dose independent | sin | 13 | NA |
| 407 | 80.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 419 | 80.33 | wind | 9 | 4320 | < th | dose independent | rect. | 19 | 21 |
| 420 | 80.33 | radiation | 10 | 90 | > th | dose dependent | rect. | 17 | 1 |
| 421 | 80.33 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 16 | 2 |
| 437 | 80.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 448 | 80.42 | atmosphere | 1000 | 30 | < th | dose independent | rect. | 16 | 3 |
| 467 | 80.47 | wind | 9 | 4320 | < th | dose independent | rect. | 12 | 8 |
| 486 | 80.48 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 489 | 80.49 | wind | 5 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 502 | 80.52 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 1 |
| 548 | 80.56 | wind | 9 | 4320 | < th | dose independent | sin | 3 | NA |
| 562 | 80.59 | wind | 5 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 591 | 80.69 | atmosphere | 995 | 30 | < th | dose independent | sin | 9 | NA |
| 664 | 80.72 | atmosphere | 995 | 30 | < th | dose dependent | sin | 9 | NA |
| 707 | 80.75 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 774 | 80.77 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 851 | 80.79 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 18 |
| 969 | 80.80 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 16 |