BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0510700 Os05g0510700|AK070308
(296 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0510700 BSD domain containing protein 452 e-127
Os01g0766600 BSD domain containing protein 239 2e-63
Os03g0729900 BSD domain containing protein 122 4e-28
Os11g0557300 BSD domain containing protein 115 4e-26
>Os05g0510700 BSD domain containing protein
Length = 296
Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/296 (82%), Positives = 244/296 (82%)
Query: 1 MLQSNKAVAEISKIASSLLPFGQGDADXXXXXXXXXXXXXXXXRHISTRPETWLDFPLFI 60
MLQSNKAVAEISKIASSLLPFGQGDAD RHISTRPETWLDFPLFI
Sbjct: 1 MLQSNKAVAEISKIASSLLPFGQGDADEGEPVAGVTEEVVVFVRHISTRPETWLDFPLFI 60
Query: 61 SERYADDFELSDAQYVHALSMEHLVPSLSDIKAAICSTDMSEACFWKIYFVLLHSKLNKQ 120
SERYADDFELSDAQYVHALSMEHLVPSLSDIKAAICSTDMSEACFWKIYFVLLHSKLNKQ
Sbjct: 61 SERYADDFELSDAQYVHALSMEHLVPSLSDIKAAICSTDMSEACFWKIYFVLLHSKLNKQ 120
Query: 121 DAELLSTPQILQAREELLQSLQTKNKRGSEVPEEEESSKTVIMSSAPAEEKVIQPSSIEN 180
DAELLSTPQILQAREELLQSLQTKNKRGSEVPEEEESSKTVIMSSAPAEEKVIQPSSIEN
Sbjct: 121 DAELLSTPQILQAREELLQSLQTKNKRGSEVPEEEESSKTVIMSSAPAEEKVIQPSSIEN 180
Query: 181 KAGKPEVSSFEEPSSDISPDVEAEKFPIAITEMEIVDKSVIEEELSVKNETKSLAIEPKI 240
KAGKPEVSSFEEPSSDISPDVEAEKFPIAITEMEIVDKSVIEEELSVKNETKSLAIEPKI
Sbjct: 181 KAGKPEVSSFEEPSSDISPDVEAEKFPIAITEMEIVDKSVIEEELSVKNETKSLAIEPKI 240
Query: 241 HSXXXXXXXXXXXXXXXXXXXXXGTEGNRTSLGQXXXXXXXXXXXXXXXGNKGIAK 296
HS GTEGNRTSLGQ GNKGIAK
Sbjct: 241 HSETDEDEVDEWPDDDDDAEEVVGTEGNRTSLGQEEDVSFSDLEDDDDDGNKGIAK 296
>Os01g0766600 BSD domain containing protein
Length = 397
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 131/237 (55%), Positives = 162/237 (68%), Gaps = 18/237 (7%)
Query: 1 MLQSNKAVAEISKIASSLLPFGQGDADXXXXXXXXXXXXXXXX---RHISTRPETWLDFP 57
+L + AVAEISKIASSLLPFG G+ D RHIST PETWLDFP
Sbjct: 119 LLSNANAVAEISKIASSLLPFGPGEDDDDDDDAEAVGVTEEVVEFVRHISTHPETWLDFP 178
Query: 58 LFISERYADDFELSDAQYVHALSMEHLVPSLSDIKAAICSTDMSEACFWKIYFVLLHSKL 117
LF+++R+ADDFELSD QY HAL++E +VPSLS ++ +CST+MSEACFWKIYFVLLHSKL
Sbjct: 179 LFVNDRHADDFELSDTQYGHALAIERVVPSLSYLRTELCSTNMSEACFWKIYFVLLHSKL 238
Query: 118 NKQDAELLSTPQILQAREELLQSLQTKNKRGSEVPEEEESSKTVIMSSAPAEEKVIQPSS 177
+KQDAELLSTPQIL+ARE LLQS TK + G P++ S + S+
Sbjct: 239 SKQDAELLSTPQILKAREVLLQSSPTKKRLG---PDDGSSQNWNVASTKG---------- 285
Query: 178 IENKAGKPEVSSFEEPSSDISPDVEAEKFPIAITEMEIVDKSVIEEELSVKNETKSL 234
+ +G E S EE +S VEA+K PI++ E+EI+DKSV+EEEL VKNETKS+
Sbjct: 286 --DNSGMSEAPSLEEATSVPMNVVEADKHPISVAEVEIIDKSVVEEELVVKNETKSI 340
>Os03g0729900 BSD domain containing protein
Length = 242
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 101/169 (59%), Gaps = 30/169 (17%)
Query: 68 FELSDAQYVHALSMEHLVPSLSDIKAAICSTDMSEACFWKIYFVLLHSKLNKQDAELLST 127
F++S+AQ HAL++E L P L+ ++ +C MSE CFWKIYFVLLH +LNK DAELLST
Sbjct: 68 FDMSNAQQEHALAIEQLAPRLAALRIELCPIHMSEECFWKIYFVLLHPRLNKHDAELLST 127
Query: 128 PQILQAREELLQSLQTKNKRGSE----------VPEEEESSKTVIMSSAPAEEKVIQPSS 177
PQI++AR L+Q LQ ++K +E + EE++SK + + PS
Sbjct: 128 PQIVEARAMLMQCLQHQSKFETEQLFHRKDDFGMHSEEDTSKDI---------PEVFPSM 178
Query: 178 IENKAGKPEVSSFEEPSSDISPDVEAEKFPIAITEMEIVDKSVIEEELS 226
++ A ++ F E EK PI +TE+ +VDKSVI+E+L+
Sbjct: 179 LQQTASVIPITDF-----------ETEKHPIQVTEVAVVDKSVIKEQLT 216
>Os11g0557300 BSD domain containing protein
Length = 430
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 94/145 (64%), Gaps = 6/145 (4%)
Query: 2 LQSNKAVAEISKIASSLLPFGQGDADXXXXXXXXXXXXXXXXRHISTRPETWLDFPLFIS 61
L +AVA+++KIASSLLP R +TRPE WLD +
Sbjct: 97 LPGRQAVADLAKIASSLLP----PEAAEAEAAGFTEEAVAFARDAATRPELWLD--FPLL 150
Query: 62 ERYADDFELSDAQYVHALSMEHLVPSLSDIKAAICSTDMSEACFWKIYFVLLHSKLNKQD 121
DDF+++DAQ HAL++E + P L+D++ +C + MSE CFWKIYFVLLH KL+K D
Sbjct: 151 PDDDDDFDMTDAQQDHALAVESVAPELADLRIELCPSHMSEGCFWKIYFVLLHPKLSKDD 210
Query: 122 AELLSTPQILQAREELLQSLQTKNK 146
A+LLSTPQIL+AR++L ++LQ+++K
Sbjct: 211 ADLLSTPQILEARKKLSRNLQSESK 235
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.309 0.126 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,566,134
Number of extensions: 273925
Number of successful extensions: 793
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 785
Number of HSP's successfully gapped: 4
Length of query: 296
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 196
Effective length of database: 11,814,401
Effective search space: 2315622596
Effective search space used: 2315622596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 156 (64.7 bits)