Os01g0766600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : BSD domain containing protein.
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Os01g0766600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : BSD domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.65 | 0.251 | 11.6 | 0.839 | 1.04 | -0.522 | -0.44 | -0.0769 | 0.322 | 18.4 | 70 | 1237 | -- | -- |
| 28.66 | 0.249 | 11.6 | 0.848 | 1.05 | -0.525 | -0.441 | -- | 0.326 | 18.5 | 70 | 1233 | -- | -- |
| 29.11 | 0.251 | 11.6 | 0.845 | 1.05 | -0.527 | -- | -0.0773 | 0.32 | 18.5 | 69.97 | 1223 | -- | -- |
| 29.13 | 0.251 | 11.6 | 0.854 | 1.05 | -0.533 | -- | -- | 0.323 | 18.5 | 70 | 1223 | -- | -- |
| 84.79 | 0.429 | 11.6 | 0.888 | -- | -0.599 | -- | 0.0081 | 0.312 | -- | 69.84 | 1289 | -- | -- |
| 38.79 | 0.292 | 11.6 | 0.736 | 1.07 | -- | -0.487 | -- | 0.285 | 18 | -- | -- | -- | -- |
| 39.37 | 0.294 | 11.6 | 0.74 | 1.07 | -- | -- | -- | 0.283 | 18.1 | -- | -- | -- | -- |
| 84.67 | 0.429 | 11.6 | 0.878 | -- | -0.606 | -- | -- | 0.307 | -- | 69 | 1289 | -- | -- |
| 36.39 | 0.281 | 11.6 | -- | 1.04 | -0.891 | -- | -- | 0.335 | 17.9 | 66 | 29232 | -- | -- |
| 98.44 | 0.464 | 11.6 | 0.709 | -- | -- | -- | -- | 0.259 | -- | -- | -- | -- | -- |
| 53.81 | 0.343 | 11.6 | -- | 1.06 | -- | -- | -- | 0.201 | 18.1 | -- | -- | -- | -- |
| 93.49 | 0.45 | 11.6 | -- | -- | -0.81 | -- | -- | 0.283 | -- | 66 | 28692 | -- | -- |
| 111.71 | 0.493 | 11.6 | -- | -- | -- | -- | -- | 0.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.40 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 16 | 29.58 | humidity | 70 | 1440 | < th | dose independent | sin | 14 | NA |
| 20 | 29.62 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 23 | 29.63 | radiation | 30 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 39 | 29.66 | humidity | 70 | 1440 | > th | dose independent | sin | 13 | NA |
| 42 | 29.67 | radiation | 40 | 1440 | > th | dose independent | sin | 13 | NA |
| 45 | 29.68 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 46 | 29.68 | radiation | 40 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 48 | 29.69 | temperature | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 53 | 29.69 | radiation | 30 | 1440 | > th | dose dependent | sin | 13 | NA |
| 56 | 29.71 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 62 | 29.72 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 88 | 29.72 | radiation | 30 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 92 | 29.74 | temperature | 30 | 1440 | > th | dose independent | sin | 12 | NA |
| 116 | 29.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 137 | 29.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 139 | 29.82 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 140 | 29.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 146 | 29.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 167 | 29.84 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 187 | 29.85 | humidity | 80 | 1440 | < th | dose dependent | sin | 15 | NA |
| 193 | 29.86 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 207 | 29.87 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 215 | 29.87 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 13 |
| 233 | 29.88 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 253 | 29.89 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 5 |
| 254 | 29.89 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 285 | 29.93 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 290 | 29.95 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 304 | 29.95 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 306 | 29.95 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 351 | 29.98 | temperature | 30 | 14400 | > th | dose dependent | sin | 11 | NA |
| 366 | 29.99 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 17 |
| 376 | 30.01 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 386 | 30.02 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 414 | 30.03 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 19 |
| 439 | 30.05 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 445 | 30.05 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 468 | 30.07 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 18 |
| 477 | 30.08 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 10 |
| 479 | 30.08 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 15 |
| 629 | 30.15 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 669 | 30.16 | radiation | 40 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 714 | 30.17 | temperature | 30 | 1440 | > th | dose dependent | sin | 15 | NA |
| 738 | 30.18 | radiation | 1 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 780 | 30.19 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 815 | 30.20 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 819 | 30.20 | humidity | 70 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 820 | 30.20 | radiation | 40 | 1440 | < th | dose independent | rect. | 14 | 14 |
| 958 | 30.21 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 959 | 30.22 | radiation | 40 | 1440 | < th | dose independent | sin | 13 | NA |
| 991 | 30.23 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 9 |