Os03g0729900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : BSD domain containing protein.
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Os03g0729900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : BSD domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.81 | 0.229 | 9.14 | 0.168 | 0.505 | -0.504 | -0.512 | -0.143 | 0.12 | 4.48 | 9.05 | 79 | -- | -- |
| 23.84 | 0.227 | 9.14 | 0.166 | 0.503 | -0.5 | -0.472 | -- | 0.12 | 4.51 | 8.57 | 79 | -- | -- |
| 24.41 | 0.23 | 9.14 | 0.17 | 0.499 | -0.503 | -- | 0.0714 | 0.125 | 4.51 | 8.542 | 72 | -- | -- |
| 24.42 | 0.23 | 9.14 | 0.168 | 0.503 | -0.507 | -- | -- | 0.12 | 4.52 | 8.737 | 72 | -- | -- |
| 31.03 | 0.259 | 9.14 | 0.204 | -- | -0.761 | -- | 0.418 | 0.164 | -- | -13.4 | 268 | -- | -- |
| 27.53 | 0.246 | 9.15 | 0.159 | 0.664 | -- | -0.426 | -- | 0.0998 | 3.38 | -- | -- | -- | -- |
| 28.1 | 0.248 | 9.15 | 0.166 | 0.661 | -- | -- | -- | 0.102 | 3.34 | -- | -- | -- | -- |
| 31.39 | 0.261 | 9.14 | 0.203 | -- | -0.764 | -- | -- | 0.162 | -- | -1.926 | 263 | -- | -- |
| 25.17 | 0.234 | 9.15 | -- | 0.516 | -0.5 | -- | -- | 0.101 | 4.38 | 11.48 | 73 | -- | -- |
| 52.73 | 0.339 | 9.15 | 0.194 | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
| 28.83 | 0.251 | 9.15 | -- | 0.664 | -- | -- | -- | 0.0838 | 3.34 | -- | -- | -- | -- |
| 32.47 | 0.265 | 9.14 | -- | -- | -0.751 | -- | -- | 0.138 | -- | -1.76 | 230 | -- | -- |
| 53.73 | 0.342 | 9.15 | -- | -- | -- | -- | -- | 0.0982 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.86 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 7 |
| 12 | 22.86 | wind | 5 | 270 | < th | dose independent | rect. | 13 | 18 |
| 16 | 22.95 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 18 | 23.04 | radiation | 20 | 270 | > th | dose independent | rect. | 9 | 2 |
| 20 | 23.07 | radiation | 10 | 270 | > th | dose independent | sin | 6 | NA |
| 23 | 23.10 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 7 |
| 25 | 23.11 | radiation | 40 | 10 | < th | dose independent | rect. | 4 | 17 |
| 47 | 23.23 | radiation | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 51 | 23.26 | radiation | 1 | 270 | > th | dose dependent | sin | 7 | NA |
| 56 | 23.28 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 57 | 23.29 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 59 | 23.30 | humidity | 80 | 270 | < th | dose independent | rect. | 21 | 16 |
| 122 | 23.35 | radiation | 20 | 270 | < th | dose dependent | rect. | 2 | 12 |
| 128 | 23.38 | radiation | 20 | 30 | < th | dose independent | rect. | 4 | 17 |
| 158 | 23.41 | radiation | 10 | 90 | > th | dose dependent | sin | 4 | NA |
| 210 | 23.43 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 4 |
| 214 | 23.44 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 227 | 23.45 | radiation | 40 | 90 | < th | dose independent | rect. | 23 | 22 |
| 258 | 23.46 | humidity | 50 | 270 | > th | dose independent | rect. | 7 | 19 |
| 261 | 23.46 | humidity | 50 | 270 | > th | dose independent | rect. | 5 | 23 |
| 271 | 23.48 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 24 | 9 |
| 316 | 23.52 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 15 |
| 336 | 23.54 | radiation | 40 | 90 | < th | dose dependent | rect. | 4 | 16 |
| 345 | 23.56 | radiation | 20 | 30 | < th | dose independent | rect. | 6 | 15 |
| 350 | 23.56 | radiation | 10 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 365 | 23.59 | radiation | 40 | 10 | < th | dose dependent | rect. | 4 | 17 |
| 367 | 23.60 | radiation | 20 | 30 | < th | dose independent | rect. | 23 | 23 |
| 369 | 23.60 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 399 | 23.64 | radiation | 40 | 10 | < th | dose independent | rect. | 11 | 23 |
| 401 | 23.64 | radiation | 40 | 90 | < th | dose dependent | sin | 2 | NA |
| 495 | 23.71 | radiation | 40 | 90 | < th | dose independent | rect. | 11 | 22 |
| 497 | 23.71 | radiation | 40 | 90 | > th | dose independent | rect. | 14 | 23 |
| 545 | 23.74 | radiation | 40 | 90 | > th | dose independent | rect. | 8 | 5 |
| 567 | 23.74 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 571 | 23.74 | radiation | 40 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 663 | 23.79 | radiation | 40 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 693 | 23.81 | humidity | 80 | 270 | < th | dose independent | sin | 7 | NA |
| 694 | 23.81 | humidity | 80 | 270 | < th | dose independent | rect. | 7 | 6 |
| 729 | 23.81 | radiation | 40 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 732 | 23.82 | humidity | 80 | 270 | < th | dose independent | rect. | 5 | 8 |
| 756 | 23.83 | humidity | 80 | 270 | < th | dose independent | rect. | 8 | 3 |
| 757 | 23.83 | humidity | 80 | 270 | < th | dose independent | rect. | 3 | 10 |
| 771 | 23.84 | humidity | 80 | 270 | < th | dose independent | rect. | 9 | 1 |
| 810 | 23.86 | radiation | 20 | 270 | < th | dose independent | sin | 8 | NA |
| 868 | 23.89 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 1 |
| 869 | 23.89 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 15 |
| 870 | 23.89 | radiation | 40 | 10 | < th | dose independent | rect. | 23 | 23 |
| 921 | 23.91 | wind | 1 | 270 | > th | dose independent | rect. | 13 | 18 |
| 940 | 23.92 | radiation | 40 | 90 | > th | dose independent | sin | 5 | NA |
| 943 | 23.92 | radiation | 40 | 10 | < th | dose independent | rect. | 2 | 19 |
| 954 | 23.93 | radiation | 20 | 30 | < th | dose independent | sin | 2 | NA |