BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0729900 Os03g0729900|AJ575244
(242 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G65910.1 | chr5:26361592-26363341 REVERSE LENGTH=433 160 6e-40
AT3G49800.1 | chr3:18471957-18473676 REVERSE LENGTH=429 147 5e-36
AT1G10720.1 | chr1:3562964-3564446 FORWARD LENGTH=430 141 3e-34
AT2G10950.1 | chr2:4315534-4317800 REVERSE LENGTH=337 82 3e-16
>AT5G65910.1 | chr5:26361592-26363341 REVERSE LENGTH=433
Length = 432
Score = 160 bits (405), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 90/192 (46%), Positives = 121/192 (63%), Gaps = 17/192 (8%)
Query: 26 WDVIGITEEVLAFATNIARHPETWXXXXXXXXXXXXXXXXXXXXMSNAQQEHALAIEQLA 85
+DVIG+TEE++AF ++A HPETW +++AQ EHALA+E+LA
Sbjct: 140 YDVIGVTEELVAFVKDLAMHPETWLDFPLPDDDDSFDDFE----LADAQYEHALAVERLA 195
Query: 86 PRLAALRIELCPIHMSEECFWKIYFVLLHPRLNKHDAELLSTPQIVEARAMLMQCLQHQS 145
P LA+LRIELCP +M+E CFW+IYFVL+HP+L+K A LLSTPQ++EAR+ML Q LQ +S
Sbjct: 196 PSLASLRIELCPEYMTENCFWRIYFVLVHPKLSKDHALLLSTPQVLEARSMLSQELQKRS 255
Query: 146 KFETEQLFHRKDDFGMHSEEDTSKDIPEVFPSMLQQTASVI--PI--TDFETEKHPIQVT 201
K E SE +T P P + A I P+ +D ET+KHPI+
Sbjct: 256 KLPVE---------AGSSEANTVIVEPLTVPPSPETAAVKIVNPVESSDVETDKHPIESK 306
Query: 202 EVAVVDKSVIKE 213
E+ +VDKSVI+E
Sbjct: 307 EIQIVDKSVIEE 318
>AT3G49800.1 | chr3:18471957-18473676 REVERSE LENGTH=429
Length = 428
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 115/197 (58%), Gaps = 14/197 (7%)
Query: 27 DVIGITEEVLAFATNIARHPETWXXXXXXXXXXXXXXXXXXXXMSNAQQEHALAIEQLAP 86
+ IG+TEEV+ FA ++A HPETW M++AQ EHALA+E LA
Sbjct: 161 NAIGVTEEVVLFARDLALHPETWLDFPFPDEDDNFDDFE----MTDAQYEHALAVENLAS 216
Query: 87 RLAALRIELCPIHMSEECFWKIYFVLLHPRLNKHDAELLSTPQIVEARAMLMQCLQHQSK 146
LAALRIELCP +MSE CFW+IYFVL+HP +KHDA LSTPQ++E+RA+L L +
Sbjct: 217 SLAALRIELCPAYMSEYCFWRIYFVLVHPIFSKHDALTLSTPQVLESRALLSHELLRKRN 276
Query: 147 FETEQLFHRKDDFGMHSE---------EDTSKDIPEVFPSMLQQTASVIPITDFETEKHP 197
+T + D G SE + K PE ++ +T ++FETEKH
Sbjct: 277 KDT-VVVPESSDRGADSENVEPLFQPTNPSPKSEPEPVKTITVETIHSAERSEFETEKHT 335
Query: 198 IQVTEVAVVDKSVIKEQ 214
++ EV VVDK VI+E+
Sbjct: 336 VETKEVQVVDKPVIEER 352
>AT1G10720.1 | chr1:3562964-3564446 FORWARD LENGTH=430
Length = 429
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/205 (42%), Positives = 117/205 (57%), Gaps = 13/205 (6%)
Query: 28 VIGITEEVLAFATNIARHPETWXXXXXXXXXXXXXXXXXXXXMSNAQQEHALAIEQLAPR 87
+ +T+EVLAFA NIA HPETW MS+AQ+ HALAIE+LAPR
Sbjct: 172 AVALTDEVLAFARNIAMHPETWLDFPLDPDEDLDDLE-----MSDAQRGHALAIERLAPR 226
Query: 88 LAALRIELCPIHMSEECFWKIYFVLLHPRLNKHDAELLSTPQIVEARAMLMQCLQHQ--S 145
LAALRIELCP HMS FWK+YFVLL RLNKHDA LLS+PQ++EARA+ M+ LQ+Q S
Sbjct: 227 LAALRIELCPCHMSVGYFWKVYFVLLLSRLNKHDAHLLSSPQVMEARALWMKELQNQTHS 286
Query: 146 KFETEQLFHRKDDFGMHSEEDTSKDIPEVF-PSMLQQTASVIPITDFETEKHPIQVTEVA 204
E+ + ++D + + PE P + I DFE H + +
Sbjct: 287 SKESRDMILEEEDITPSTSNYYNHAPPEFLSPRIYAFEPPSIMYRDFE---HGFENAQ-- 341
Query: 205 VVDKSVIKEQLTKDGSKTPNVLQES 229
+DK+VI+E+ + K L ++
Sbjct: 342 FIDKAVIEEKPIQKNDKNSASLSQT 366
>AT2G10950.1 | chr2:4315534-4317800 REVERSE LENGTH=337
Length = 336
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 64/117 (54%), Gaps = 9/117 (7%)
Query: 28 VIGITEEVLAFATNIARHPETWXXXXXXXXXXXXXXXXXXXXMSNAQQEHALAIEQLAPR 87
V GI+EEV+ FA I+ P W +S AQ+ HA AIE L P
Sbjct: 108 VPGISEEVVDFAVKISTKPGCWTDFPLSLDTEFE--------LSEAQRAHASAIEDLVPG 159
Query: 88 LAALRIELCPIHMSEECFWKIYFVLLHPRLNKHDAELLSTPQIVEARAMLMQCLQHQ 144
L A++ ++ +M +E FW IYF+LL PRLN HD ELL+T ++ E R L+ LQ +
Sbjct: 160 LVAVKNQVSS-YMDDEHFWLIYFILLMPRLNGHDFELLATCKVFETRDQLLLKLQKK 215
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,839,833
Number of extensions: 132010
Number of successful extensions: 358
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 4
Length of query: 242
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 146
Effective length of database: 8,474,633
Effective search space: 1237296418
Effective search space used: 1237296418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)