BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0729900 Os03g0729900|AJ575244
         (242 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0729900  BSD domain containing protein                       373   e-104
Os01g0766600  BSD domain containing protein                       142   2e-34
Os05g0510700  BSD domain containing protein                       127   5e-30
Os11g0557300  BSD domain containing protein                       126   1e-29

>Os03g0729900 BSD domain containing protein
          Length = 242

 Score =  373 bits (957), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/242 (79%), Positives = 192/242 (79%)

Query: 1   KELDDXXXXXXXXXXXXXXXXXXXXWDVIGITEEVLAFATNIARHPETWXXXXXXXXXXX 60
           KELDD                    WDVIGITEEVLAFATNIARHPETW           
Sbjct: 1   KELDDHELELETVRHEEEEEEVEEEWDVIGITEEVLAFATNIARHPETWLDFPLLPDDDD 60

Query: 61  XXXXXXXXXMSNAQQEHALAIEQLAPRLAALRIELCPIHMSEECFWKIYFVLLHPRLNKH 120
                    MSNAQQEHALAIEQLAPRLAALRIELCPIHMSEECFWKIYFVLLHPRLNKH
Sbjct: 61  SDGPFSYFDMSNAQQEHALAIEQLAPRLAALRIELCPIHMSEECFWKIYFVLLHPRLNKH 120

Query: 121 DAELLSTPQIVEARAMLMQCLQHQSKFETEQLFHRKDDFGMHSEEDTSKDIPEVFPSMLQ 180
           DAELLSTPQIVEARAMLMQCLQHQSKFETEQLFHRKDDFGMHSEEDTSKDIPEVFPSMLQ
Sbjct: 121 DAELLSTPQIVEARAMLMQCLQHQSKFETEQLFHRKDDFGMHSEEDTSKDIPEVFPSMLQ 180

Query: 181 QTASVIPITDFETEKHPIQVTEVAVVDKSVIKEQLTKDGSKTPNVLQESXXXXXXXXXXE 240
           QTASVIPITDFETEKHPIQVTEVAVVDKSVIKEQLTKDGSKTPNVLQES          E
Sbjct: 181 QTASVIPITDFETEKHPIQVTEVAVVDKSVIKEQLTKDGSKTPNVLQESFDDDIDDWFDE 240

Query: 241 EA 242
           EA
Sbjct: 241 EA 242



>Os01g0766600 BSD domain containing protein
          Length = 397

 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/188 (40%), Positives = 114/188 (60%), Gaps = 9/188 (4%)

Query: 28  VIGITEEVLAFATNIARHPETWXXXXXXXXXXXXXXXXXXXXMSNAQQEHALAIEQLAPR 87
            +G+TEEV+ F  +I+ HPETW                    +S+ Q  HALAIE++ P 
Sbjct: 153 AVGVTEEVVEFVRHISTHPETWLDFPLFVNDRHADDFE----LSDTQYGHALAIERVVPS 208

Query: 88  LAALRIELCPIHMSEECFWKIYFVLLHPRLNKHDAELLSTPQIVEARAMLMQCLQHQSKF 147
           L+ LR ELC  +MSE CFWKIYFVLLH +L+K DAELLSTPQI++AR +L+Q    + + 
Sbjct: 209 LSYLRTELCSTNMSEACFWKIYFVLLHSKLSKQDAELLSTPQILKAREVLLQSSPTKKRL 268

Query: 148 ETEQLFHRKDDFGMHSEEDTSKDIPEVFPSMLQQTASVIPITDFETEKHPIQVTEVAVVD 207
             +       ++ + S +  +  + E  PS+ + T+  +P+   E +KHPI V EV ++D
Sbjct: 269 GPDD--GSSQNWNVASTKGDNSGMSEA-PSLEEATS--VPMNVVEADKHPISVAEVEIID 323

Query: 208 KSVIKEQL 215
           KSV++E+L
Sbjct: 324 KSVVEEEL 331



>Os05g0510700 BSD domain containing protein
          Length = 296

 Score =  127 bits (320), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 83/202 (41%), Positives = 112/202 (55%), Gaps = 20/202 (9%)

Query: 28  VIGITEEVLAFATNIARHPETWXXXXXXXXXXXXXXXXXXXXMSNAQQEHALAIEQLAPR 87
           V G+TEEV+ F  +I+  PETW                    +S+AQ  HAL++E L P 
Sbjct: 32  VAGVTEEVVVFVRHISTRPETWLDFPLFISERYADDFE----LSDAQYVHALSMEHLVPS 87

Query: 88  LAALRIELCPIHMSEECFWKIYFVLLHPRLNKHDAELLSTPQIVEARAMLMQCLQHQSK- 146
           L+ ++  +C   MSE CFWKIYFVLLH +LNK DAELLSTPQI++AR  L+Q LQ ++K 
Sbjct: 88  LSDIKAAICSTDMSEACFWKIYFVLLHSKLNKQDAELLSTPQILQAREELLQSLQTKNKR 147

Query: 147 -FETEQLFHRKDDFGMHSEEDTSKDI-----------PEVFPSMLQQTASVIPITDFETE 194
             E  +         M S     K I           PEV  S  + ++ + P  D E E
Sbjct: 148 GSEVPEEEESSKTVIMSSAPAEEKVIQPSSIENKAGKPEV-SSFEEPSSDISP--DVEAE 204

Query: 195 KHPIQVTEVAVVDKSVIKEQLT 216
           K PI +TE+ +VDKSVI+E+L+
Sbjct: 205 KFPIAITEMEIVDKSVIEEELS 226



>Os11g0557300 BSD domain containing protein
          Length = 430

 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/116 (53%), Positives = 78/116 (67%), Gaps = 6/116 (5%)

Query: 36  LAFATNIARHPETWXXXXXXXXXXXXXXXXXXXXMSNAQQEHALAIEQLAPRLAALRIEL 95
           +AFA + A  PE W                    M++AQQ+HALA+E +AP LA LRIEL
Sbjct: 131 VAFARDAATRPELWLDFPLLPDDDDDFD------MTDAQQDHALAVESVAPELADLRIEL 184

Query: 96  CPIHMSEECFWKIYFVLLHPRLNKHDAELLSTPQIVEARAMLMQCLQHQSKFETEQ 151
           CP HMSE CFWKIYFVLLHP+L+K DA+LLSTPQI+EAR  L + LQ +SK ++ +
Sbjct: 185 CPSHMSEGCFWKIYFVLLHPKLSKDDADLLSTPQILEARKKLSRNLQSESKPDSNE 240



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.130    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,808,994
Number of extensions: 193047
Number of successful extensions: 415
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 409
Number of HSP's successfully gapped: 4
Length of query: 242
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 144
Effective length of database: 11,918,829
Effective search space: 1716311376
Effective search space used: 1716311376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)