BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0510200 Os05g0510200|AK064302
(361 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0510200 Similar to Glycine-rich cell wall structural p... 706 0.0
Os02g0196300 Bacterial surface antigen (D15) family protein 186 2e-47
Os11g0116500 Similar to Chloroplastic outer envelope membra... 76 4e-14
Os03g0271200 Similar to Chloroplastic outer envelope membra... 72 7e-13
>Os05g0510200 Similar to Glycine-rich cell wall structural protein 1.0 precursor
(GRP 1.0)
Length = 361
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/361 (95%), Positives = 346/361 (95%)
Query: 1 MGAQQSVNAGKAKVDVHVDLTHMLCEALLLPPMRNSGATFSQIVGRISLKHPSLFGRSEK 60
MGAQQSVNAGKAKVDVHVDLTHMLCEALLLPPMRNSGATFSQIVGRISLKHPSLFGRSEK
Sbjct: 1 MGAQQSVNAGKAKVDVHVDLTHMLCEALLLPPMRNSGATFSQIVGRISLKHPSLFGRSEK 60
Query: 61 LDVILDKGINESNAVIAFRRPRPEWLSQQSFVIQHTMTPEIAVHGFPADNFTRSGSRGIN 120
LDVILDKGINESNAVIAFRRPRPEWLSQQSFVIQHTMTPEIAVHGFPADNFTRSGSRGIN
Sbjct: 61 LDVILDKGINESNAVIAFRRPRPEWLSQQSFVIQHTMTPEIAVHGFPADNFTRSGSRGIN 120
Query: 121 LSRLSLGVELNEPSTSNWTSGTSVKFEHIRPVNNEGRSIARDHDGFPLTCSGNLHDNMII 180
LSRLSLGVELNEPSTSNWTSGTSVKFEHIRPVNNEGRSIARDHDGFPLTCSGNLHDNMII
Sbjct: 121 LSRLSLGVELNEPSTSNWTSGTSVKFEHIRPVNNEGRSIARDHDGFPLTCSGNLHDNMII 180
Query: 181 LKQESGYADVNDNSFLKVNLQMEQGLPLVPKSLTFNRVKCAVSKGMKLGPTFLVTSLTGG 240
LKQESGYADVNDNSFLKVNLQMEQGLPLVPKSLTFNRVKCAVSKGMKLGPTFLVTSLTGG
Sbjct: 181 LKQESGYADVNDNSFLKVNLQMEQGLPLVPKSLTFNRVKCAVSKGMKLGPTFLVTSLTGG 240
Query: 241 SIVGDMAPYQAFAIGGLGSVRGYGEGAVGAGRLCLIANCEYTVPLAKHLEGSIFMDCGSD 300
SIVGDMAPYQAFAIGGLGSVRGYGEGAVGAGRLCLIANCEYTVPLAKHLEGSIFMDCGSD
Sbjct: 241 SIVGDMAPYQAFAIGGLGSVRGYGEGAVGAGRLCLIANCEYTVPLAKHLEGSIFMDCGSD 300
Query: 301 LGSACHVPGNPALRQXXXXXXXXXXXXXXXNTDLGQIRVDYAMNAFSRKTIYFGINSGGG 360
LGSACHVPGNPALRQ NTDLGQIRVDYAMNAFSRKTIYFGINSGGG
Sbjct: 301 LGSACHVPGNPALRQGKPGFGVGFGYGIHFNTDLGQIRVDYAMNAFSRKTIYFGINSGGG 360
Query: 361 S 361
S
Sbjct: 361 S 361
>Os02g0196300 Bacterial surface antigen (D15) family protein
Length = 513
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/322 (32%), Positives = 177/322 (54%), Gaps = 14/322 (4%)
Query: 40 FSQIVGRISLKHPSLFGRSEKLDVILDKGINESNAVIAFRRPRPEWL------SQQSFVI 93
S ++G + H ++FGR++KL++ L++G +S + + P W+ + ++ ++
Sbjct: 196 LSGLIGSFAYSHRNVFGRNKKLNLSLERGQIDSIFRLNYTDP---WIDGDNKRTSRTIMV 252
Query: 94 QHTMTPEIAVHGFPADNFTRSGSRGINLSRLSLGVELNEPSTSNWTSGTSVKFEHIRPVN 153
Q++ TP +HG + G I + R++ G+E + P W+ + F+H +
Sbjct: 253 QNSRTPGTLIHG---GDHPDHGP--ITIGRVTAGIEYSRPFRPKWSGTLGLIFQHAGARD 307
Query: 154 NEGRSIARDHDGFPLTCSGNLHDNMIILKQESGYADVNDNSFLKVNLQMEQGLPLVPKSL 213
++G I RD LT SGN +D+ ++ K ES Y D D S +EQGLP++P+ L
Sbjct: 308 DKGNPIIRDFYNSQLTASGNAYDDTLLAKLESVYTDSGDRSSTMFVFNIEQGLPILPEWL 367
Query: 214 TFNRVKCAVSKGMKLGPTFLVTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGAGRL 273
+FNRV + +G ++GP L+ S +GG + G+ +P++AFAIGG SVRGY EGAVG+GR
Sbjct: 368 SFNRVTARLRQGYEIGPARLLLSASGGHVEGNFSPHEAFAIGGTNSVRGYEEGAVGSGRS 427
Query: 274 CLIANCEYTVPLAKHLEGSIFMDCGSDLGSACHVPGNPALRQXXXXXXXXXXXXXXXNTD 333
+ + E + + LEG +F D GSDL S VPG+PA + ++
Sbjct: 428 YAVGSGEVSCRMFGPLEGVVFGDYGSDLSSGPKVPGDPAGARGKPGSGYGYGVGVRVDSP 487
Query: 334 LGQIRVDYAMNAFSRKTIYFGI 355
LG +R++YA N + +FG+
Sbjct: 488 LGPLRLEYAFNDKQARRFHFGV 509
>Os11g0116500 Similar to Chloroplastic outer envelope membrane protein (OEP75)
precursor (Outer membrane protein)
Length = 660
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 92/202 (45%), Gaps = 31/202 (15%)
Query: 165 GFPLTCSGNLHDNMIILKQESGYADVNDNSFLKVN---------LQMEQGLPLVPKSLTF 215
G P T SG D M L+ A++ ++ VN QM+QGL + K+ F
Sbjct: 452 GPPTTLSGTGVDRMAFLQ-----ANITRDNTEFVNGATIGDRCIFQMDQGLGIGSKNPFF 506
Query: 216 NRVKCAVSKGMKLG--------PTFLVTSLTG--GSIVGDMAPYQAFAIGGLGSVRGYGE 265
NR + V+K + L P V +L G VGD+ Y AFA+GG SVRGYG
Sbjct: 507 NRHQLTVTKFINLNKQEKGSRKPPPAVLALHGRYAGCVGDLPSYDAFALGGPHSVRGYGM 566
Query: 266 GAVGAGRLCLIANCEYTVPLA---KHLEGSIFMDCGSDLGSACHVPGNPALRQXXXXXXX 322
G +GA R L E +VP+ +H + F + G+DLGS+ V GNP
Sbjct: 567 GELGASRNLLEVATELSVPITVKNRHTQVYAFAEHGTDLGSSKDVEGNPT----EFFRRV 622
Query: 323 XXXXXXXXNTDLGQIRVDYAMN 344
LG +R +YA++
Sbjct: 623 GHGSSYGVGVKLGAVRAEYAVD 644
>Os03g0271200 Similar to Chloroplastic outer envelope membrane protein (OEP75)
precursor (Outer membrane protein)
Length = 817
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 109/228 (47%), Gaps = 37/228 (16%)
Query: 105 GFPADNFTRSGSRGINLSRLSLGVELNEPSTSNWTSGTSVKFEHIRPVNNEGRSIARDHD 164
GF A N T S +R S+ + G+ + E +T + T+ S+ R + + G S+ D
Sbjct: 563 GFKA-NITESFTR---QSKFTYGLVVEEITTRDETN--SICTHGSRAMPSGGLSM----D 612
Query: 165 GFPLTCSGNLHDNMIILKQESGYADVNDNSFLKVN---------LQMEQGLPLVPKSLTF 215
G P T SG D M L+ A++ ++ VN Q++QGL + K+ F
Sbjct: 613 GPPTTLSGTGIDRMAFLQ-----ANITRDNTEFVNGAVIGDRCIFQLDQGLGIGSKNPFF 667
Query: 216 NRVKCAVSKGMKLG----------PTFLVTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGE 265
NR + ++K + L P LV VGD+ Y AF +GG SVRGYG
Sbjct: 668 NRHQLTLTKFVNLNKQEKGAGKPLPAVLVLHGHYAGCVGDLPSYDAFTLGGPYSVRGYGM 727
Query: 266 GAVGAGRLCLIANCEYTVPLAK-HLEGSIFMDCGSDLGSACHVPGNPA 312
G +GA R L E +P+ ++ G F++ G+DLGS+ V GNP
Sbjct: 728 GELGASRNVLEVASELRIPVRNTYVYG--FVEHGTDLGSSKDVKGNPT 773
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,548,261
Number of extensions: 529614
Number of successful extensions: 1051
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1046
Number of HSP's successfully gapped: 4
Length of query: 361
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 259
Effective length of database: 11,709,973
Effective search space: 3032883007
Effective search space used: 3032883007
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)