BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0503000 Os05g0503000|AK068335
(282 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0503000 Similar to Secretory carrier membrane protein 497 e-141
Os01g0780500 SCAMP family protein 439 e-123
Os07g0564600 Similar to Secretory carrier membrane protein 375 e-104
Os03g0582200 SCAMP family protein 313 7e-86
Os04g0595800 Similar to Secretory carrier membrane protein 245 2e-65
>Os05g0503000 Similar to Secretory carrier membrane protein
Length = 282
Score = 497 bits (1280), Expect = e-141, Method: Compositional matrix adjust.
Identities = 249/282 (88%), Positives = 249/282 (88%)
Query: 1 MAGKHGRNGFEDDDVNPFAGGSVPPANNSRLPPLSHEPADFYNVDIPXXXXXXXXXXXXX 60
MAGKHGRNGFEDDDVNPFAGGSVPPANNSRLPPLSHEPADFYNVDIP
Sbjct: 1 MAGKHGRNGFEDDDVNPFAGGSVPPANNSRLPPLSHEPADFYNVDIPLDSSKDLKKKEKE 60
Query: 61 XQAMXXXXXXXXXXXXXXXXXXXQAGIVIEDKNWPPFFPLIHHNISNEIPIHLQRMQYLA 120
QAM QAGIVIEDKNWPPFFPLIHHNISNEIPIHLQRMQYLA
Sbjct: 61 LQAMEAELNKRERELKRKEEAAAQAGIVIEDKNWPPFFPLIHHNISNEIPIHLQRMQYLA 120
Query: 121 FSSFLGLAACLFWNIIATTTAWVKGEGVIIWLLAIIYFISGVPGAYVLWYRPLYNAMRTE 180
FSSFLGLAACLFWNIIATTTAWVKGEGVIIWLLAIIYFISGVPGAYVLWYRPLYNAMRTE
Sbjct: 121 FSSFLGLAACLFWNIIATTTAWVKGEGVIIWLLAIIYFISGVPGAYVLWYRPLYNAMRTE 180
Query: 181 SALKFGWFFLFYLIHIIFCVWAAVAPPFPFKGKSLAGILPAIDVIGRSAIVGIFYFVGFG 240
SALKFGWFFLFYLIHIIFCVWAAVAPPFPFKGKSLAGILPAIDVIGRSAIVGIFYFVGFG
Sbjct: 181 SALKFGWFFLFYLIHIIFCVWAAVAPPFPFKGKSLAGILPAIDVIGRSAIVGIFYFVGFG 240
Query: 241 LFCLESLLSIGVIQQVYMYFRGSGKAAEMKREAARGALSSAF 282
LFCLESLLSIGVIQQVYMYFRGSGKAAEMKREAARGALSSAF
Sbjct: 241 LFCLESLLSIGVIQQVYMYFRGSGKAAEMKREAARGALSSAF 282
>Os01g0780500 SCAMP family protein
Length = 286
Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust.
Identities = 218/287 (75%), Positives = 237/287 (82%), Gaps = 6/287 (2%)
Query: 1 MAGKHGRNGFEDDDVNPFAGGSVPPANNSRLPPLSHEPADFYN-----VDIPXXXXXXXX 55
MAG++ RN F++DDVNPFAGGSVPPA+NSR+PPL HEP FYN VDIP
Sbjct: 1 MAGRYDRNPFDEDDVNPFAGGSVPPASNSRMPPLPHEPG-FYNDRGATVDIPLDSTKDMK 59
Query: 56 XXXXXXQAMXXXXXXXXXXXXXXXXXXXQAGIVIEDKNWPPFFPLIHHNISNEIPIHLQR 115
QA +AGIVIE+KNWPPFFP+IHH+ISNEIPIHLQR
Sbjct: 60 KKEKELQAKEAELNKRESELRRREEAASRAGIVIEEKNWPPFFPIIHHDISNEIPIHLQR 119
Query: 116 MQYLAFSSFLGLAACLFWNIIATTTAWVKGEGVIIWLLAIIYFISGVPGAYVLWYRPLYN 175
MQYLAFSS LGLAACLFWNIIATT AW+KG GV+IWLLAIIYFISGVPGAYVLWYRPLYN
Sbjct: 120 MQYLAFSSLLGLAACLFWNIIATTAAWIKGAGVMIWLLAIIYFISGVPGAYVLWYRPLYN 179
Query: 176 AMRTESALKFGWFFLFYLIHIIFCVWAAVAPPFPFKGKSLAGILPAIDVIGRSAIVGIFY 235
AMRTESALKFGWFFLFYLIHI+FC+W+AVAPPFPFKGKSLAGILPAIDVIG +AIVGIFY
Sbjct: 180 AMRTESALKFGWFFLFYLIHILFCIWSAVAPPFPFKGKSLAGILPAIDVIGNNAIVGIFY 239
Query: 236 FVGFGLFCLESLLSIGVIQQVYMYFRGSGKAAEMKREAARGALSSAF 282
F+GFGLFCLESLLS+ VIQQVYMYFRGSGKAAEMKREAARGA+ SAF
Sbjct: 240 FIGFGLFCLESLLSVVVIQQVYMYFRGSGKAAEMKREAARGAMRSAF 286
>Os07g0564600 Similar to Secretory carrier membrane protein
Length = 306
Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/306 (64%), Positives = 224/306 (73%), Gaps = 24/306 (7%)
Query: 1 MAGKHGRNGFEDDDVNPF-------AGG---------------SVPP-ANNSRLPPLSHE 37
MAG++ N FE+DDVNPF AGG +VP ++NSRL PL E
Sbjct: 1 MAGRYDSNPFEEDDVNPFSEQARGKAGGQPSYGGGAFYMPNPRNVPSVSSNSRLSPLPPE 60
Query: 38 PADF-YNVDIPXXXXXXXXXXXXXXQAMXXXXXXXXXXXXXXXXXXXQAGIVIEDKNWPP 96
PA F VDIP QA +AGIVIE+KNWPP
Sbjct: 61 PAAFGATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEEKNWPP 120
Query: 97 FFPLIHHNISNEIPIHLQRMQYLAFSSFLGLAACLFWNIIATTTAWVKGEGVIIWLLAII 156
F PLIHH+I+NEIP HLQRMQY+AF+SFLGLA CLFWN+IA T+AWVKGEGV IWLLAII
Sbjct: 121 FLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAII 180
Query: 157 YFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHIIFCVWAAVAPPFPFKGKSLA 216
YFISGVPGAYVLWYRPLYNAMRT+SALKFG FFL YL HI+FCV++AVAPP F+GKSLA
Sbjct: 181 YFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVFSAVAPPVVFEGKSLA 240
Query: 217 GILPAIDVIGRSAIVGIFYFVGFGLFCLESLLSIGVIQQVYMYFRGSGKAAEMKREAARG 276
GILPAID+I ++A+VGIFYFVGFGLFC+ESLLSI VIQQVYMYFRGSGKAAEMKR+A RG
Sbjct: 241 GILPAIDLISKNALVGIFYFVGFGLFCVESLLSIWVIQQVYMYFRGSGKAAEMKRDATRG 300
Query: 277 ALSSAF 282
A+ +AF
Sbjct: 301 AMRAAF 306
>Os03g0582200 SCAMP family protein
Length = 313
Score = 313 bits (803), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 170/303 (56%), Positives = 195/303 (64%), Gaps = 35/303 (11%)
Query: 1 MAGKHG-RNGFED---DDVNPFA---------------GG---------SVPPANNSRLP 32
MAG+ N FE+ D+VNPFA GG S PPA + L
Sbjct: 1 MAGRSRYDNPFEEGGGDEVNPFADKASKGGSAGQSSYSGGAFYTTQSRPSAPPATH--LS 58
Query: 33 PLSHEPADFYN-----VDIPXXXXXXXXXXXXXXQAMXXXXXXXXXXXXXXXXXXXQAGI 87
PL EPADFYN VDIP A +AGI
Sbjct: 59 PLPPEPADFYNDFSTPVDIPMDTSKDMKTREKELLAKEAELNRREKEIKRREEAAARAGI 118
Query: 88 VIEDKNWPPFFPLIHHNISNEIPIHLQRMQYLAFSSFLGLAACLFWNIIATTTAWVKGEG 147
V+EDKNWPPFFP+IH++I NEIP+HLQR QY+AF+S LGL CLFWNII T AW+KGEG
Sbjct: 119 VLEDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGEG 178
Query: 148 VIIWLLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHIIFCVWAAVAPP 207
IW LA+IYFI G PGAY LWYRPLY AMR ESALKFGWFFLFYL+HI FCV+AAV+P
Sbjct: 179 PKIWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCVYAAVSPS 238
Query: 208 FPFKGKSLAGILPAIDVIGRSAIVGIFYFVGFGLFCLESLLSIGVIQQVYMYFRGSGKAA 267
F GKSL GI PAI +IG + IVG+FYF+GF +FCLESLLS+ VIQ+VY+YFRGSGK A
Sbjct: 239 ILFVGKSLTGIFPAISLIGNTVIVGVFYFLGFAMFCLESLLSMWVIQRVYLYFRGSGKEA 298
Query: 268 EMK 270
EMK
Sbjct: 299 EMK 301
>Os04g0595800 Similar to Secretory carrier membrane protein
Length = 273
Score = 245 bits (626), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 114/180 (63%), Positives = 140/180 (77%)
Query: 84 QAGIVIEDKNWPPFFPLIHHNISNEIPIHLQRMQYLAFSSFLGLAACLFWNIIATTTAWV 143
AG+ +EDKNWPPFFP+IHH+I+NEIP +LQ++QYLAF+S+LG+ CL WN IA W+
Sbjct: 93 NAGVPMEDKNWPPFFPIIHHDIANEIPANLQKLQYLAFASWLGIVLCLSWNFIAVIVCWI 152
Query: 144 KGEGVIIWLLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHIIFCVWAA 203
K ++ LA IY + G+P +Y++WYRPLY AMRT SA FGWFFL YLIHI FC+ AA
Sbjct: 153 KEGDSKLFFLATIYALLGIPLSYLIWYRPLYRAMRTNSAFSFGWFFLCYLIHIGFCIIAA 212
Query: 204 VAPPFPFKGKSLAGILPAIDVIGRSAIVGIFYFVGFGLFCLESLLSIGVIQQVYMYFRGS 263
+APP F GKSL GIL AID I+GIFYFVGF LFCLE+LLSIGV+Q+VYMYFRG+
Sbjct: 213 IAPPIVFHGKSLTGILAAIDTFSEHVIIGIFYFVGFALFCLETLLSIGVLQRVYMYFRGN 272
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.144 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,539,552
Number of extensions: 365784
Number of successful extensions: 1163
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1157
Number of HSP's successfully gapped: 5
Length of query: 282
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 182
Effective length of database: 11,814,401
Effective search space: 2150220982
Effective search space used: 2150220982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 155 (64.3 bits)