Os07g0564600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Secretory carrier membrane protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0564600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Secretory carrier membrane protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.19 | 0.376 | 10.5 | -1.41 | 1.39 | -0.596 | -0.852 | 0.38 | -0.508 | 7.37 | 82 | 783 | -- | -- |
| 64.42 | 0.374 | 10.5 | -1.39 | 1.38 | -0.595 | -0.672 | -- | -0.505 | 7.39 | 82.56 | 800 | -- | -- |
| 65.8 | 0.378 | 10.5 | -1.42 | 1.39 | -0.638 | -- | 0.0876 | -0.524 | 7.36 | 82 | 798 | -- | -- |
| 65.65 | 0.377 | 10.5 | -1.4 | 1.38 | -0.601 | -- | -- | -0.504 | 7.41 | 82.73 | 800 | -- | -- |
| 109.28 | 0.487 | 10.5 | -1.3 | -- | 0.704 | -- | -0.209 | -0.413 | -- | 75 | 498 | -- | -- |
| 71.73 | 0.397 | 10.5 | -1.39 | 1.1 | -- | -0.73 | -- | -0.477 | 6.94 | -- | -- | -- | -- |
| 73.1 | 0.4 | 10.5 | -1.41 | 1.09 | -- | -- | -- | -0.476 | 6.96 | -- | -- | -- | -- |
| 109.32 | 0.487 | 10.5 | -1.34 | -- | 0.718 | -- | -- | -0.418 | -- | 74.65 | 498 | -- | -- |
| 116.02 | 0.502 | 10.5 | -- | 1.39 | -0.644 | -- | -- | -0.381 | 7.41 | 84 | 733 | -- | -- |
| 135.99 | 0.545 | 10.5 | -1.38 | -- | -- | -- | -- | -0.455 | -- | -- | -- | -- | -- |
| 125.2 | 0.523 | 10.5 | -- | 1.08 | -- | -- | -- | -0.319 | 7.04 | -- | -- | -- | -- |
| 155.57 | 0.581 | 10.5 | -- | -- | 0.88 | -- | -- | -0.276 | -- | 70 | 544 | -- | -- |
| 186.47 | 0.637 | 10.5 | -- | -- | -- | -- | -- | -0.302 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.88 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 11 |
| 4 | 58.42 | humidity | 80 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 8 | 59.50 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 9 |
| 14 | 59.95 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 22 | 60.71 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 27 | 60.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 10 |
| 35 | 61.27 | humidity | 80 | 720 | > th | dose independent | rect. | 21 | 1 |
| 37 | 61.34 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 45 | 61.54 | humidity | 80 | 720 | < th | dose independent | rect. | 20 | 1 |
| 47 | 61.59 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 15 |
| 59 | 61.87 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 62 | 61.91 | temperature | 20 | 90 | > th | dose independent | rect. | 4 | 1 |
| 64 | 61.92 | temperature | 25 | 270 | < th | dose independent | sin | 6 | NA |
| 100 | 62.24 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 129 | 62.44 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 13 |
| 194 | 62.84 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 8 |
| 196 | 62.87 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 9 |
| 216 | 63.03 | temperature | 25 | 270 | > th | dose independent | sin | 6 | NA |
| 220 | 63.05 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 8 |
| 225 | 63.10 | humidity | 80 | 720 | > th | dose independent | rect. | 19 | 5 |
| 232 | 63.14 | humidity | 80 | 720 | > th | dose independent | sin | 13 | NA |
| 235 | 63.15 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 237 | 63.15 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 254 | 63.25 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 14 |
| 263 | 63.27 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 2 |
| 287 | 63.33 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 292 | 63.35 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 15 |
| 328 | 63.54 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 7 |
| 342 | 63.57 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 395 | 63.68 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 19 |
| 432 | 63.83 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 14 |
| 461 | 63.92 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 17 |
| 463 | 63.93 | wind | 1 | 30 | > th | dose independent | rect. | 23 | 17 |
| 486 | 64.00 | temperature | 20 | 270 | > th | dose dependent | sin | 6 | NA |
| 526 | 64.07 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 1 |
| 528 | 64.07 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 16 | 7 |
| 553 | 64.13 | humidity | 90 | 720 | < th | dose dependent | sin | 11 | NA |
| 562 | 64.16 | wind | 7 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 564 | 64.16 | temperature | 10 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 567 | 64.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 571 | 64.16 | humidity | 50 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 580 | 64.16 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 581 | 64.16 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 582 | 64.16 | radiation | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 593 | 64.16 | temperature | 10 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 604 | 64.18 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 15 |
| 621 | 64.21 | wind | 1 | 30 | < th | dose independent | rect. | 2 | 6 |
| 638 | 64.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 6 |
| 649 | 64.29 | humidity | 80 | 720 | < th | dose independent | sin | 13 | NA |
| 656 | 64.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 683 | 64.37 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 690 | 64.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 4 |
| 693 | 64.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 9 |
| 704 | 64.43 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 20 |
| 711 | 64.45 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 749 | 64.52 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 764 | 64.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 772 | 64.59 | humidity | 90 | 30 | > th | dose independent | rect. | 4 | 1 |
| 795 | 64.62 | radiation | 1 | 10 | < th | dose independent | rect. | 23 | 18 |
| 798 | 64.63 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 6 |
| 832 | 64.66 | humidity | 80 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 834 | 64.66 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 3 |
| 836 | 64.67 | humidity | 80 | 1440 | < th | dose independent | sin | 8 | NA |
| 856 | 64.69 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 14 | 9 |
| 858 | 64.70 | humidity | 80 | 1440 | > th | dose independent | sin | 7 | NA |
| 885 | 64.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 891 | 64.74 | radiation | 1 | 10 | < th | dose dependent | rect. | 23 | 18 |
| 914 | 64.77 | humidity | 90 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 924 | 64.78 | humidity | 80 | 720 | > th | dose dependent | rect. | 21 | 2 |