Os03g0582200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SCAMP family protein.
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Os03g0582200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SCAMP family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.34 | 0.313 | 11.6 | 0.956 | 0.637 | 0.863 | 0.2 | -0.78 | 0.576 | 19.8 | 19.7 | 2688 | -- | -- |
| 45.09 | 0.313 | 11.5 | 1.03 | 0.644 | 1.04 | 0.247 | -- | 0.6 | 19.7 | 19.5 | 2753 | -- | -- |
| 44.43 | 0.31 | 11.6 | 0.94 | 0.641 | 0.866 | -- | -0.805 | 0.573 | 19.8 | 19.7 | 2756 | -- | -- |
| 45.11 | 0.313 | 11.5 | 1.05 | 0.644 | 1.08 | -- | -- | 0.604 | 19.8 | 19.4 | 2762 | -- | -- |
| 64.57 | 0.374 | 11.6 | 0.988 | -- | 0.78 | -- | -0.808 | 0.546 | -- | 21.3 | 2151 | -- | -- |
| 64.12 | 0.375 | 11.5 | 1.59 | 0.63 | -- | 0.281 | -- | 0.834 | 20 | -- | -- | -- | -- |
| 64.36 | 0.376 | 11.5 | 1.59 | 0.63 | -- | -- | -- | 0.834 | 20 | -- | -- | -- | -- |
| 64.73 | 0.375 | 11.5 | 1.08 | -- | 1.08 | -- | -- | 0.603 | -- | 19.4 | 2110 | -- | -- |
| 51.48 | 0.334 | 11.6 | -- | 0.628 | 1.41 | -- | -- | 0.323 | 19.7 | 19.4 | 24233 | -- | -- |
| 86.06 | 0.433 | 11.5 | 1.58 | -- | -- | -- | -- | 0.826 | -- | -- | -- | -- | -- |
| 130.62 | 0.535 | 11.5 | -- | 0.621 | -- | -- | -- | 0.657 | 20.2 | -- | -- | -- | -- |
| 69.4 | 0.388 | 11.6 | -- | -- | 1.53 | -- | -- | 0.346 | -- | 17.06 | 47520 | -- | -- |
| 151.88 | 0.575 | 11.5 | -- | -- | -- | -- | -- | 0.651 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 8 |
| 41 | 43.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 44 | 43.33 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 110 | 43.45 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 111 | 43.45 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 196 | 43.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 219 | 43.63 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 267 | 43.73 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 270 | 43.74 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 273 | 43.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 326 | 43.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 12 |
| 350 | 43.91 | temperature | 15 | 1440 | > th | dose dependent | sin | 9 | NA |
| 356 | 43.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 12 |
| 368 | 43.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 426 | 44.09 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 435 | 44.11 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 459 | 44.15 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 16 |
| 493 | 44.20 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 13 |
| 534 | 44.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 8 |
| 593 | 44.37 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 616 | 44.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 650 | 44.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 674 | 44.49 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 683 | 44.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 692 | 44.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 5 |
| 788 | 44.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 795 | 44.67 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 836 | 44.75 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 850 | 44.78 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 941 | 44.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |