BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0582200 Os03g0582200|AK058432
(313 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0582200 SCAMP family protein 508 e-144
Os07g0564600 Similar to Secretory carrier membrane protein 327 8e-90
Os01g0780500 SCAMP family protein 325 2e-89
Os05g0503000 Similar to Secretory carrier membrane protein 303 9e-83
Os04g0595800 Similar to Secretory carrier membrane protein 256 2e-68
>Os03g0582200 SCAMP family protein
Length = 313
Score = 508 bits (1309), Expect = e-144, Method: Compositional matrix adjust.
Identities = 251/296 (84%), Positives = 251/296 (84%)
Query: 1 MAGRSRYDNPFEEGGGDEVNPFADKXXXXXXXXXXXXXXXXFYTTQSRPSAPPATHLSPL 60
MAGRSRYDNPFEEGGGDEVNPFADK FYTTQSRPSAPPATHLSPL
Sbjct: 1 MAGRSRYDNPFEEGGGDEVNPFADKASKGGSAGQSSYSGGAFYTTQSRPSAPPATHLSPL 60
Query: 61 PPEPADFYNDFSTPVDIPMDTSKDMKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIVL 120
PPEPADFYNDFSTPVDIPMDTSKDMKT GIVL
Sbjct: 61 PPEPADFYNDFSTPVDIPMDTSKDMKTREKELLAKEAELNRREKEIKRREEAAARAGIVL 120
Query: 121 EDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGEGPK 180
EDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGEGPK
Sbjct: 121 EDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGEGPK 180
Query: 181 IWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCVYAAVSPSIL 240
IWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCVYAAVSPSIL
Sbjct: 181 IWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCVYAAVSPSIL 240
Query: 241 FVGKSLTGIFPAISLIGNTVIVGVFYFLGFAMFCLESLLSMWVIQRVYLYFRGSGK 296
FVGKSLTGIFPAISLIGNTVIVGVFYFLGFAMFCLESLLSMWVIQRVYLYFRGSGK
Sbjct: 241 FVGKSLTGIFPAISLIGNTVIVGVFYFLGFAMFCLESLLSMWVIQRVYLYFRGSGK 296
>Os07g0564600 Similar to Secretory carrier membrane protein
Length = 306
Score = 327 bits (838), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 169/299 (56%), Positives = 199/299 (66%), Gaps = 13/299 (4%)
Query: 1 MAGRSRYD-NPFEEGGGDEVNPFADKXXXXXXXXXXXXXXXXFYTTQSR--PSAPPATHL 57
MAGR YD NPFEE D+VNPF+++ FY R PS + L
Sbjct: 1 MAGR--YDSNPFEE---DDVNPFSEQARGKAGGQPSYGGGA-FYMPNPRNVPSVSSNSRL 54
Query: 58 SPLPPEPADFYNDFSTPVDIPMDTSKDMKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 117
SPLPPEPA F VDIP+D+SKD+K G
Sbjct: 55 SPLPPEPAAF----GATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAG 110
Query: 118 IVLEDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGE 177
IV+E+KNWPPF P+IH+DI NEIP HLQR QYVAFAS LGL CLFWN+I VT+AW+KGE
Sbjct: 111 IVIEEKNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGE 170
Query: 178 GPKIWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCVYAAVSP 237
G KIW LA+IYFI G PGAY LWYRPLY AMR +SALKFG FFL YL HI FCV++AV+P
Sbjct: 171 GVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVFSAVAP 230
Query: 238 SILFVGKSLTGIFPAISLIGNTVIVGVFYFLGFAMFCLESLLSMWVIQRVYLYFRGSGK 296
++F GKSL GI PAI LI +VG+FYF+GF +FC+ESLLS+WVIQ+VY+YFRGSGK
Sbjct: 231 PVVFEGKSLAGILPAIDLISKNALVGIFYFVGFGLFCVESLLSIWVIQQVYMYFRGSGK 289
>Os01g0780500 SCAMP family protein
Length = 286
Score = 325 bits (833), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 172/299 (57%), Positives = 199/299 (66%), Gaps = 33/299 (11%)
Query: 1 MAGRSRYD-NPFEEGGGDEVNPFADKXXXXXXXXXXXXXXXXFYTTQSRPSAPPATH--L 57
MAGR YD NPF+E D+VNPFA S PPA++ +
Sbjct: 1 MAGR--YDRNPFDE---DDVNPFAGG------------------------SVPPASNSRM 31
Query: 58 SPLPPEPADFYNDFSTPVDIPMDTSKDMKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 117
PLP EP FYND VDIP+D++KDMK G
Sbjct: 32 PPLPHEPG-FYNDRGATVDIPLDSTKDMKKKEKELQAKEAELNKRESELRRREEAASRAG 90
Query: 118 IVLEDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGE 177
IV+E+KNWPPFFPIIH+DI NEIP+HLQR QY+AF+SLLGL CLFWNII TAAWIKG
Sbjct: 91 IVIEEKNWPPFFPIIHHDISNEIPIHLQRMQYLAFSSLLGLAACLFWNIIATTAAWIKGA 150
Query: 178 GPKIWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCVYAAVSP 237
G IW LA+IYFI G PGAY LWYRPLY AMR ESALKFGWFFLFYL+HI FC+++AV+P
Sbjct: 151 GVMIWLLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHILFCIWSAVAP 210
Query: 238 SILFVGKSLTGIFPAISLIGNTVIVGVFYFLGFAMFCLESLLSMWVIQRVYLYFRGSGK 296
F GKSL GI PAI +IGN IVG+FYF+GF +FCLESLLS+ VIQ+VY+YFRGSGK
Sbjct: 211 PFPFKGKSLAGILPAIDVIGNNAIVGIFYFIGFGLFCLESLLSVVVIQQVYMYFRGSGK 269
>Os05g0503000 Similar to Secretory carrier membrane protein
Length = 282
Score = 303 bits (777), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 167/298 (56%), Positives = 194/298 (65%), Gaps = 35/298 (11%)
Query: 1 MAGRSRYDNPFEEGGGDEVNPFADKXXXXXXXXXXXXXXXXFYTTQSRPSAPPA--THLS 58
MAG+ N FE+ D+VNPFA S PPA + L
Sbjct: 1 MAGKHG-RNGFED---DDVNPFAGG------------------------SVPPANNSRLP 32
Query: 59 PLPPEPADFYNDFSTPVDIPMDTSKDMKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGI 118
PL EPADFYN VDIP+D+SKD+K GI
Sbjct: 33 PLSHEPADFYN-----VDIPLDSSKDLKKKEKELQAMEAELNKRERELKRKEEAAAQAGI 87
Query: 119 VLEDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGEG 178
V+EDKNWPPFFP+IH++I NEIP+HLQR QY+AF+S LGL CLFWNII T AW+KGEG
Sbjct: 88 VIEDKNWPPFFPLIHHNISNEIPIHLQRMQYLAFSSFLGLAACLFWNIIATTTAWVKGEG 147
Query: 179 PKIWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCVYAAVSPS 238
IW LA+IYFI G PGAY LWYRPLY AMR ESALKFGWFFLFYL+HI FCV+AAV+P
Sbjct: 148 VIIWLLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHIIFCVWAAVAPP 207
Query: 239 ILFVGKSLTGIFPAISLIGNTVIVGVFYFLGFAMFCLESLLSMWVIQRVYLYFRGSGK 296
F GKSL GI PAI +IG + IVG+FYF+GF +FCLESLLS+ VIQ+VY+YFRGSGK
Sbjct: 208 FPFKGKSLAGILPAIDVIGRSAIVGIFYFVGFGLFCLESLLSIGVIQQVYMYFRGSGK 265
>Os04g0595800 Similar to Secretory carrier membrane protein
Length = 273
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 137/287 (47%), Positives = 170/287 (59%), Gaps = 21/287 (7%)
Query: 9 NPFEEGGGDEVNPFADKXXXXXXXXXXXXXXXXFYTTQSRPSAPPATHLSPLPPEPADF- 67
NPF+EG D+ NPF++ SR P EPA F
Sbjct: 6 NPFDEGNADD-NPFSNGGGGG-------------GGGGSR------QQYGFRPTEPAGFG 45
Query: 68 YNDFSTPVDIPMDTSKDMKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIVLEDKNWPP 127
VD+P+DT D K+ G+ +EDKNWPP
Sbjct: 46 AGRGDATVDVPLDTMGDSKSKARELSSWETDLKRREADIKRREEALRNAGVPMEDKNWPP 105
Query: 128 FFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGEGPKIWFLAVI 187
FFPIIH+DI NEIP +LQ+ QY+AFAS LG+VLCL WN I V WIK K++FLA I
Sbjct: 106 FFPIIHHDIANEIPANLQKLQYLAFASWLGIVLCLSWNFIAVIVCWIKEGDSKLFFLATI 165
Query: 188 YFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCVYAAVSPSILFVGKSLT 247
Y +LG P +Y +WYRPLYRAMR SA FGWFFL YL+HI FC+ AA++P I+F GKSLT
Sbjct: 166 YALLGIPLSYLIWYRPLYRAMRTNSAFSFGWFFLCYLIHIGFCIIAAIAPPIVFHGKSLT 225
Query: 248 GIFPAISLIGNTVIVGVFYFLGFAMFCLESLLSMWVIQRVYLYFRGS 294
GI AI VI+G+FYF+GFA+FCLE+LLS+ V+QRVY+YFRG+
Sbjct: 226 GILAAIDTFSEHVIIGIFYFVGFALFCLETLLSIGVLQRVYMYFRGN 272
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.145 0.485
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,892,041
Number of extensions: 377961
Number of successful extensions: 1810
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1802
Number of HSP's successfully gapped: 5
Length of query: 313
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 212
Effective length of database: 11,762,187
Effective search space: 2493583644
Effective search space used: 2493583644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 156 (64.7 bits)